View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17093_high_16 (Length: 417)

Name: NF17093_high_16
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17093_high_16
NF17093_high_16
[»] chr3 (8 HSPs)
chr3 (22-403)||(28937579-28937958)
chr3 (33-176)||(14755139-14755282)
chr3 (26-159)||(14879516-14879649)
chr3 (26-170)||(25647755-25647899)
chr3 (59-170)||(37123451-37123560)
chr3 (103-161)||(33143893-33143951)
chr3 (103-157)||(39021222-39021276)
chr3 (26-79)||(50518955-50519008)
[»] chr5 (8 HSPs)
chr5 (25-176)||(33258749-33258900)
chr5 (40-177)||(25992069-25992206)
chr5 (98-170)||(14302370-14302442)
chr5 (26-157)||(7195109-7195239)
chr5 (72-159)||(8297548-8297635)
chr5 (111-157)||(7391990-7392036)
chr5 (103-160)||(21402782-21402839)
chr5 (131-170)||(13954207-13954246)
[»] chr1 (12 HSPs)
chr1 (175-403)||(36899724-36899950)
chr1 (60-160)||(6583118-6583218)
chr1 (26-170)||(31290887-31291031)
chr1 (96-170)||(27102260-27102334)
chr1 (28-161)||(34774949-34775084)
chr1 (65-149)||(16147648-16147732)
chr1 (26-161)||(9313176-9313310)
chr1 (65-148)||(16577352-16577435)
chr1 (45-113)||(52278430-52278498)
chr1 (103-170)||(10785405-10785471)
chr1 (60-149)||(32882463-32882552)
chr1 (28-88)||(32864446-32864505)
[»] chr6 (3 HSPs)
chr6 (25-170)||(20701670-20701815)
chr6 (25-158)||(3880465-3880598)
chr6 (109-161)||(15120548-15120600)
[»] chr7 (7 HSPs)
chr7 (26-170)||(8745222-8745366)
chr7 (26-170)||(24324665-24324809)
chr7 (122-170)||(1320864-1320912)
chr7 (65-161)||(42533160-42533256)
chr7 (103-161)||(44755667-44755725)
chr7 (103-158)||(6716682-6716736)
chr7 (98-148)||(3478443-3478493)
[»] chr4 (12 HSPs)
chr4 (25-170)||(48098402-48098547)
chr4 (26-161)||(25753250-25753385)
chr4 (25-170)||(16832888-16833033)
chr4 (26-161)||(49528150-49528285)
chr4 (96-161)||(38637171-38637236)
chr4 (98-161)||(41117907-41117970)
chr4 (84-170)||(39420939-39421025)
chr4 (97-161)||(2061677-2061741)
chr4 (60-148)||(19815122-19815210)
chr4 (60-158)||(53823322-53823421)
chr4 (107-170)||(22811109-22811172)
chr4 (60-148)||(19673191-19673279)
[»] chr2 (10 HSPs)
chr2 (26-157)||(7696044-7696175)
chr2 (25-170)||(41086663-41086809)
chr2 (25-161)||(34230279-34230414)
chr2 (53-157)||(37770537-37770641)
chr2 (45-148)||(16952269-16952372)
chr2 (45-148)||(17022934-17023037)
chr2 (45-148)||(17060240-17060343)
chr2 (106-158)||(1269564-1269616)
chr2 (86-159)||(13337354-13337427)
chr2 (60-148)||(10173479-10173567)
[»] scaffold0063 (1 HSPs)
scaffold0063 (59-170)||(58196-58307)
[»] chr8 (2 HSPs)
chr8 (28-159)||(17656872-17657003)
chr8 (103-160)||(10248498-10248555)
[»] scaffold0200 (1 HSPs)
scaffold0200 (106-170)||(19452-19516)
[»] scaffold0050 (1 HSPs)
scaffold0050 (26-159)||(36789-36921)
[»] scaffold0119 (1 HSPs)
scaffold0119 (106-158)||(42086-42138)


Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 22 - 403
Target Start/End: Original strand, 28937579 - 28937958
Alignment:
Q  22 agtaaaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28937579 agtaaaaaacacccctaaaaaacaaactcctagacctgaacatcaaagt-gagccacatccaaaaagctcctccctgaaacatcattcagcttccaccat 28937677  T
Q  122 ctcttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaacctcgagaatgccccttagaaggataaccaatttcttgcctccctcgtctc 221  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28937678 ctcttgacctccgatccaccgaaagaaaccataaaaagcccaaatccaacctcgagaatgccccttagaaggataaccaatttcttgcctccctcgtctc 28937777  T
Q  222 ttataccatcaaagagatgcacaaatcaaatgaatggaaaggaaaactcggccagaagaacttcaaatgacaacaaacacttgaacgctctgcaagatca 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28937778 ttataccatcaaagagatgcacaaatcaaatgaatggaaaggaaaactcggccagaagaacttcaaatgacaacaaacacttgaacgctctgcaagatca 28937877  T
Q  322 ataagcagggtatccattgccatgagaccaccagtgcaatcggcaatgcagctctttaggccaaggaggagagtctccattg 403  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  28937878 ataagcagggtattcattgccatgagaccaccagtgcaatcggcaacgcagctctttagg-caaggaggagagtctccattg 28937958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 14755139 - 14755282
Alignment:
Q  33 cccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctc 132  Q
    ||||| |||||||||||| || |||| |||| ||||| |||||||||||||| |||||| |||| |||| |||||||| |||||||||||||| ||||||    
T  14755139 ccccttaaaaacaaactcttaaaccttaacaccaaagctgagccacatccaacaagctcatccccgaaagatcattcaacttccaccatctctcgacctc 14755238  T
Q  133 cgatccaccgaaagaaaccataaaaagcctaaatccaacctcga 176  Q
    ||||||| |||||||||| |||||||||| ||||||||||||||    
T  14755239 cgatccatcgaaagaaacaataaaaagcccaaatccaacctcga 14755282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 14879649 - 14879516
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    |||||||||||| ||||  ||||||| |||| |||||| ||||   ||||||||||| ||||||||||  |||||| |||||| ||||||||||| ||||    
T  14879649 aaaaacacccctcaaaattaaactcccagacttgaacaccaaacccgagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctct 14879550  T
Q  126 tgacctccgatccaccgaaagaaaccataaaaag 159  Q
     ||||||| |||||||||||||||||||||||||    
T  14879549 cgacctcctatccaccgaaagaaaccataaaaag 14879516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 25647899 - 25647755
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    |||||||||||||||||| || | ||    ||||| || ||||  |||||||| ||| |||||||| |  | |||| |||||||| ||| ||||| ||||    
T  25647899 aaaaacacccctaaaaaataacccccacttcctgagcaccaaaactgagccacgtccgaaaagctcataaccgaaagatcattcaactttcaccacctct 25647800  T
Q  126 tgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
     ||||||||||||||| ||||||||||||||||||||||| ||||    
T  25647799 cgacctccgatccaccaaaagaaaccataaaaagcctaaaaccaa 25647755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 37123560 - 37123451
Alignment:
Q  59 gaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaa 158  Q
    ||||||||||| ||||||||||| |||| |||| |  |||||| ||||| |||||||||||| || | || ||||||||| | |||||||||||||||||    
T  37123560 gaacatcaaagctgagccacatcgaaaa-gctcatgtctgaaagatcatacagcttccaccacctatcgaactccgatcctc-gaaagaaaccataaaaa 37123463  T
Q  159 gcctaaatccaa 170  Q
    ||| ||| ||||    
T  37123462 gcccaaaaccaa 37123451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 33143893 - 33143951
Alignment:
Q  103 atcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
    |||| ||||||||||||| |||  |||||| ||||||||||||||||||||||||||||    
T  33143893 atcaatcagcttccaccacctcgcgacctctgatccaccgaaagaaaccataaaaagcc 33143951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 39021222 - 39021276
Alignment:
Q  103 atcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaa 157  Q
    |||| |||||| ||||||||||| ||||||||||||||| |||||| | ||||||    
T  39021222 atcaatcagctaccaccatctctcgacctccgatccaccaaaagaatctataaaa 39021276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 50518955 - 50519008
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccaca 79  Q
    |||||||||||||||||| ||| |||| | |||||||| ||||| |||||||||    
T  50518955 aaaaacacccctaaaaaataaattcctcgtcctgaacaccaaagctgagccaca 50519008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 33258749 - 33258900
Alignment:
Q  25 aaaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctc 124  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| | |||||||||||||||| |||||    
T  33258749 aaaaaacaccccacaaaaacaaactcctagacctgaacaccaaagctgagccacatccaacaagctcctccctgagaaatcattcagcttccactatctc 33258848  T
Q  125 ttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaacctcga 176  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33258849 tcgacctccgatccaccgaaagaaaccataaaaagcccaaatccaacctcga 33258900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 177
Target Start/End: Complemental strand, 25992206 - 25992069
Alignment:
Q  40 aaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatcca 139  Q
    ||||||||||||||| |||||||| |||||  ||||||| | ||||||||| ||||| |||| |||||| |||||||| ||||||  |||||||||||||    
T  25992206 aaaacaaactcctagtcctgaacaccaaagcagagccacctacaaaaagcttctccccgaaagatcattaagcttccaacatctcacgacctccgatcca 25992107  T
Q  140 ccgaaagaaaccataaaaagcctaaatccaacctcgag 177  Q
     ||||||||| ||||||||||| ||| |||||||||||    
T  25992106 tcgaaagaaatcataaaaagcccaaaaccaacctcgag 25992069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 14302370 - 14302442
Alignment:
Q  98 gaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    |||| ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  14302370 gaaagatcatgcagcttccaccacctctcgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaa 14302442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 7195109 - 7195239
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    ||||||| |||| ||||  ||||||| || |||||| | ||||| ||||||||||||  |||||||||  |  ||| || ||||||||||||| | ||||    
T  7195109 aaaaacaaccctcaaaataaaactcc-agtcctgaataccaaagctgagccacatccgcaaagctcctatccaaaagattattcagcttccacgacctct 7195207  T
Q  126 tgacctccgatccaccgaaagaaaccataaaa 157  Q
     ||||||||||||||||||| |||||||||||    
T  7195208 cgacctccgatccaccgaaaaaaaccataaaa 7195239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 8297635 - 8297548
Alignment:
Q  72 gagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaag 159  Q
    ||||||||||| ||||||||||  | |||| | |||||| ||||||||| |||  |||||||||| ||||||||||||||||||||||    
T  8297635 gagccacatccgaaaagctcctatccgaaagaccattcaacttccaccacctcacgacctccgattcaccgaaagaaaccataaaaag 8297548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 7391990 - 7392036
Alignment:
Q  111 gcttccaccatctcttgacctccgatccaccgaaagaaaccataaaa 157  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||||    
T  7391990 gcttcaaccacctctcgacctccgatccaccgaaagaaaccataaaa 7392036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 21402782 - 21402839
Alignment:
Q  103 atcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagc 160  Q
    |||| ||| ||||||||| ||||  |||||| ||||||||||||||||||||||||||    
T  21402782 atcaatcaacttccaccacctctcaacctccaatccaccgaaagaaaccataaaaagc 21402839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 13954207 - 13954246
Alignment:
Q  131 tccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  13954207 tccgatccaccgaaagaaaccataaaaagcccaaaaccaa 13954246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 175 - 403
Target Start/End: Original strand, 36899724 - 36899950
Alignment:
Q  175 gagaatgccccttagaaggataaccaatttcttgcctccctcgtctcttataccatcaaagagatgcacaaatcaaatgaatggaaaggaaaactcggcc 274  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||||||| ||| ||||||||||||||||||||||| || ||     
T  36899724 gagaatgccccttagaaggataaccaatttcttgcctccaccgtctcctataccaccaaagagatacaccaatcaaatgaatggaaaggaaaattctgct 36899823  T
Q  275 agaagaacttcaaatgacaacaaacacttgaacgctctgc-aagatcaataagcagggtatccattgccatgagaccaccagtgcaatcggcaatgcagc 373  Q
    ||||| ||||| |||||||||||| || |||| | ||| | |||| ||| ||||||||  |||||||||||||||||||| |  |||||  ||| ||||     
T  36899824 agaaggacttc-aatgacaacaaatac-tgaa-ggtcttcaaagaccaagaagcagggcttccattgccatgagaccacctgcacaatcaacaacgcaga 36899920  T
Q  374 tctttaggccaaggaggagagtctccattg 403  Q
    || ||| |||||||||||| ||||||||||    
T  36899921 tccttaagccaaggaggagggtctccattg 36899950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 6583118 - 6583218
Alignment:
Q  60 aacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaag 159  Q
    |||| ||||| |||||| ||||| ||||||||||  |||||| |||| ||||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  6583118 aacaccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcgacctccgattcaccgaaagaaaccataaaaag 6583217  T
Q  160 c 160  Q
    |    
T  6583218 c 6583218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 31290887 - 31291031
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    |||||||||||||||||| ||||  ||   |  ||||| ||||| |||||||||||| ||||||||||  | |||| ||||  || ||||||||| ||||    
T  31290887 aaaaacacccctaaaaaataaacggctcatctagaacaccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctct 31290986  T
Q  126 tgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
     ||||||||||||||||||||||||||||||||||| ||| ||||    
T  31290987 cgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaa 31291031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 27102334 - 27102260
Alignment:
Q  96 ctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||| ||||    
T  27102334 ctgaaagatcattcagcttccaccacctctcgacctccgatccaccgaaagaaaccgtaaaaagcccaaaaccaa 27102260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 34775084 - 34774949
Alignment:
Q  28 aaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatcca-aaaagctcctccctgaaaca-tcattcagcttccaccatctct 125  Q
    |||||||| ||||||| ||||||| |  ||| |||| ||||| ||||||||||||  |||| |||||  |||||||| ||| ||||||||||||| ||||    
T  34775084 aaacacccgtaaaaaataaactcccaatcctcaacaccaaagctgagccacatccggaaaaactcctatctgaaacaatcaatcagcttccaccacctct 34774985  T
Q  126 tgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
      |||||| || ||||||||||||||||||||||||    
T  34774984 caacctccaattcaccgaaagaaaccataaaaagcc 34774949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 16147732 - 16147648
Alignment:
Q  65 caaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaa 149  Q
    ||||| |||||||||||| |||||||| |  |||||| |||||||| ||| ||||| ||||  |||||||||| |||||||||||    
T  16147732 caaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctccacctccgatctaccgaaagaaa 16147648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 9313176 - 9313310
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    |||||||||| | ||||  ||||||| || |||||| | ||||| |||||||||||| |||| ||| |   ||||  ||||| || || |||||| || |    
T  9313176 aaaaacacccttcaaaattaaactcccagtcctgaa-accaaagctgagccacatccgaaaaactcgtatttgaaggatcatacaactgccaccacctat 9313274  T
Q  126 tgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
      ||||||||||||||||||||||||||||||||||    
T  9313275 ccacctccgatccaccgaaagaaaccataaaaagcc 9313310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 16577435 - 16577352
Alignment:
Q  65 caaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaa 148  Q
    |||||||||||||||||| ||||||||||     ||| |||||||||||||||||| ||||  |||||| ||| ||||||||||    
T  16577435 caaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctcaacctccaatctaccgaaagaa 16577352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 52278498 - 52278430
Alignment:
Q  45 aaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagct 113  Q
    ||||||| || ||| ||||||||||||||||||||||| |||| |||||  |||||| ||||| |||||    
T  52278498 aaactcccagtcctcaacatcaaagttgagccacatccgaaaaactcctatctgaaagatcatgcagct 52278430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 10785405 - 10785471
Alignment:
Q  103 atcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    |||||||||||||||||| |||  ||||||||| ||||||||| ||| ||||||||||| ||| ||||    
T  10785405 atcattcagcttccaccacctcgcgacctccgaaccaccgaaa-aaatcataaaaagcccaaaaccaa 10785471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 32882552 - 32882463
Alignment:
Q  60 aacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaa 149  Q
    |||| ||||| |||||||||| | ||||||||||  | |||| |||||| ||||| ||||| || | || ||||||| ||||||||||||    
T  32882552 aacaccaaagctgagccacattcgaaaagctcctgaccgaaagatcattaagctttcaccacctgtcgatctccgattcaccgaaagaaa 32882463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 32864446 - 32864505
Alignment:
Q  28 aaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaag 88  Q
    |||||||||||||||| ||||||| |||||| |||| || |||| |||||||||| |||||    
T  32864446 aaacacccctaaaaaataaactcccagacctcaaca-catagttaagccacatccgaaaag 32864505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 20701670 - 20701815
Alignment:
Q  25 aaaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctc 124  Q
    ||||||||||| | |||||||||||||||| | |||||| |||||||||||||||| | ||||||||||  | |||| |||||||||||||||| | |||    
T  20701670 aaaaaacaccctttaaaaacaaactcctagtcttgaacaacaaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctc 20701769  T
Q  125 ttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    | ||||||||||||||||||||||||||||||||||| ||| ||||    
T  20701770 tcgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaa 20701815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 3880465 - 3880598
Alignment:
Q  25 aaaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctc 124  Q
    ||||||||||||| ||||  ||||||| || | |||||| ||||| ||||||||||||||||||||| |  | |||| || ||||| ||||||||| | |    
T  3880465 aaaaaacacccctcaaaattaaactccaagtcttgaacaccaaagctgagccacatccaaaaagctcatatccgaaagattattcaacttccaccaccac 3880564  T
Q  125 ttgacctccgatccaccgaaagaaaccataaaaa 158  Q
    | |||||||||||||| |||||||||||||||||    
T  3880565 tcgacctccgatccacggaaagaaaccataaaaa 3880598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 15120548 - 15120600
Alignment:
Q  109 cagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
    |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  15120548 cagcttccaccacctctcgacctccgatccaccaaaagaaaccataaaaagcc 15120600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 8745366 - 8745222
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    |||||||||||| ||||  ||||||| || | |||||| ||||| |||||||||||| ||||||||||  |||||| ||||| |||||||||| | ||||    
T  8745366 aaaaacacccctcaaaattaaactcccagtcttgaacaccaaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctct 8745267  T
Q  126 tgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
     ||||||||||||||||||||||||||||||||||| ||| ||||    
T  8745266 cgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaa 8745222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 24324665 - 24324809
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    |||||||||||| ||||  ||||||   | |||||||| ||||| ||||||||| || ||||||||||  | |||| |||||||||||||||||| | ||    
T  24324665 aaaaacacccctcaaaataaaactctccgtcctgaacaccaaagctgagccacagccgaaaagctcctaaccgaaagatcattcagcttccaccacccct 24324764  T
Q  126 tgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
     ||||||||||||||| ||||||||||||||||||| ||| ||||    
T  24324765 cgacctccgatccacctaaagaaaccataaaaagcccaaaaccaa 24324809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 1320912 - 1320864
Alignment:
Q  122 ctcttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  1320912 ctctcgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaa 1320864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 42533160 - 42533256
Alignment:
Q  65 caaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
    ||||| ||| ||| |||| |||||||| |  |||||| ||| ||||| | |||||| |||  |||||| ||||||||||||||||||||||||||||    
T  42533160 caaagctgatccatatccgaaaagctcttatctgaaagatcgttcagttgccaccacctcacgacctctgatccaccgaaagaaaccataaaaagcc 42533256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 44755725 - 44755667
Alignment:
Q  103 atcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
    |||||||||||||||||| || | |||||| |||  |||||||||||||||||||||||    
T  44755725 atcattcagcttccaccacctatcgacctctgatataccgaaagaaaccataaaaagcc 44755667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 6716682 - 6716736
Alignment:
Q  103 atcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaa 158  Q
    |||| ||||||||||||| |||| ||| || |||||||||||||||||||||||||    
T  6716682 atcaatcagcttccaccacctctcgacttc-gatccaccgaaagaaaccataaaaa 6716736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 3478493 - 3478443
Alignment:
Q  98 gaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaa 148  Q
    |||| |||||||||||||| ||| |||| || |||||||||||||||||||    
T  3478493 gaaagatcattcagcttccgccacctctcgatctccgatccaccgaaagaa 3478443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 48098547 - 48098402
Alignment:
Q  25 aaaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctc 124  Q
    |||| |||||||||||||| ||||||| || | | |||| |||||||||||||||||| ||||||||||  |||||| ||| |||| ||||||||| |||    
T  48098547 aaaatacacccctaaaaaataaactcccagtcttaaacaccaaagttgagccacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctc 48098448  T
Q  125 ttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    | ||||| ||||||| |||||||||| |||||||||| ||| ||||    
T  48098447 tcgaccttcgatccatcgaaagaaactataaaaagcccaaaaccaa 48098402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 25753385 - 25753250
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    |||||||||||| ||||  |||||   || |||||||||||||||||| |||||||||||||||| ||| | |||| ||||||||||||||||   || |    
T  25753385 aaaaacacccctcaaaattaaactttcagtcctgaacatcaaagttgaaccacatccaaaaagcttctctccgaaagatcattcagcttccactgcctat 25753286  T
Q  126 tgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
     |||||||||||||||||||||||| ||||||||||    
T  25753285 cgacctccgatccaccgaaagaaacaataaaaagcc 25753250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 16832888 - 16833033
Alignment:
Q  25 aaaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctc 124  Q
    ||||||||||||| ||||  ||||||  || | |||||| |||||||||||||||||| |||||||| |  |  ||| ||||||||||||| | || |||    
T  16832888 aaaaaacacccctcaaaattaaactcacagtcttgaacaccaaagttgagccacatccgaaaagctcatatcccaaagatcattcagcttcaatcacctc 16832987  T
Q  125 ttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    ||||| ||||| |||| |||||||||||||||||||| ||||||||    
T  16832988 ttgacttccgaaccactgaaagaaaccataaaaagcccaaatccaa 16833033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 49528285 - 49528150
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    |||||||||||| ||||  ||||||  || | |||||| ||||| ||| ||||||||  |||||| ||  | |||| |||||||| ||||||||| |||     
T  49528285 aaaaacacccctcaaaataaaactctcagtcttgaacaccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccaccacctcc 49528186  T
Q  126 tgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
     |||||||||||||||||||||||||||||||||||    
T  49528185 cgacctccgatccaccgaaagaaaccataaaaagcc 49528150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 38637171 - 38637236
Alignment:
Q  96 ctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  38637171 ctgaaagatcattcagcttccaccacctctcgacctccgatccaccaaaagaaaccataaaaagcc 38637236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 41117907 - 41117970
Alignment:
Q  98 gaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
    |||| |||||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||    
T  41117907 gaaagatcattcagcttccaccacctctcgacctctgatccatcgaaagaaaccataaaaagcc 41117970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 39420939 - 39421025
Alignment:
Q  84 aaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    ||||||||||  |||||| |||| |||| |||||||| |||| || |||||||||||||||| ||||||||||||||| ||| ||||    
T  39420939 aaaagctcctatctgaaatatcaatcagtttccaccacctctcgatctccgatccaccgaaaaaaaccataaaaagcccaaaaccaa 39421025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 2061677 - 2061741
Alignment:
Q  97 tgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
    ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||| ||| |||||||    
T  2061677 tgaaagatcattcaacttccaccacctctcgacctccgatccaccgaaagaaatcatcaaaagcc 2061741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 19815122 - 19815210
Alignment:
Q  60 aacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaa 148  Q
    |||| ||||||| |||||||||  ||||| ||||  | |||| |||||| |||||||||||||||| |||||||| |||||||||||||    
T  19815122 aacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatctctcgacctccggtccaccgaaagaa 19815210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 53823322 - 53823421
Alignment:
Q  60 aacatcaaagttgagccacatccaaaaagctcctc-cctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaa 158  Q
    |||| ||||| |||||||||||| ||||||||||  ||  ||| |||| ||| ||||||||| |||| ||||| ||||| ||||||||||||||||||||    
T  53823322 aacaccaaagctgagccacatcctaaaagctcctatccaaaaagatcaatcaacttccaccacctctcgaccttcgatcaaccgaaagaaaccataaaaa 53823421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 22811109 - 22811172
Alignment:
Q  107 ttcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    |||| ||||||||| ||||  |||||| ||||| ||| ||||||||||||||||||||| ||||    
T  22811109 ttcaacttccaccacctctcaacctccaatccatcgagagaaaccataaaaagcctaaaaccaa 22811172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 19673279 - 19673191
Alignment:
Q  60 aacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaa 148  Q
    |||| ||||||| |||||||||| ||||| || |  |  ||| |||||| |||||||||||||| | ||||  ||||||||||||||||    
T  19673279 aacaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccaccatctatcgaccgtcgatccaccgaaagaa 19673191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 7696175 - 7696044
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    |||||||||||||||||  |||||||| | |||||||| ||||||||||||||||||  ||| |||||  | |||| |||||||||||||||||| |||     
T  7696175 aaaaacacccctaaaaataaaactcctggtcctgaacaccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctcc 7696076  T
Q  126 tgacctccgatccaccgaaagaaaccataaaa 157  Q
     ||||| ||||||||||||||||||| |||||    
T  7696075 cgaccttcgatccaccgaaagaaaccgtaaaa 7696044  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 41086663 - 41086809
Alignment:
Q  25 aaaaaacacccctaaaaaacaaactcctagacctgaacatc-aaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatct 123  Q
    ||||||||||||| |||| |||||||  |  ||||||  || ||||| ||| |||||||||||||||| |  | |||| |||||||||||||||||| ||    
T  41086663 aaaaaacacccctcaaaatcaaactcgcaatcctgaaactccaaagtagagtcacatccaaaaagctcttatccgaaagatcattcagcttccaccacct 41086762  T
Q  124 cttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    || |||||||||||||||||||| |||||||||||||| ||| ||||    
T  41086763 ctcgacctccgatccaccgaaaggaaccataaaaagcccaaaaccaa 41086809  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 34230414 - 34230279
Alignment:
Q  25 aaaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctc 124  Q
    ||||||||||| ||||||| ||| | | || ||| |||| |||||||||||||||||  |||||||| |   ||||| |||||||||||||||||| |||    
T  34230414 aaaaaacacccataaaaaaaaaaattc-agtcctaaacaccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctc 34230316  T
Q  125 ttgacctccgatccaccgaaagaaaccataaaaagcc 161  Q
    |  ||||||||||||||||||||||||| ||||||||    
T  34230315 tcaacctccgatccaccgaaagaaaccacaaaaagcc 34230279  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 37770537 - 37770641
Alignment:
Q  53 agacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaacca 152  Q
    ||||||||||| |||||  ||||||| ||  |||||||| |  |||||| ||||||||||||||| || |||| |||||||||| |||||||||||||||    
T  37770537 agacctgaacaccaaagccgagccacctcagaaaagctcatatctgaaagatcattcagcttccaacacctctcgacctccgattcaccgaaagaaacca 37770636  T
Q  153 taaaa 157  Q
    |||||    
T  37770637 taaaa 37770641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 16952269 - 16952372
Alignment:
Q  45 aaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaa 144  Q
    ||||||| || ||| |||| ||||||||| |||||||| ||||||||||  | |||| ||| || ||||||||||| ||||  |||||||||||||||||    
T  16952269 aaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaa 16952368  T
Q  145 agaa 148  Q
    ||||    
T  16952369 agaa 16952372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 17022934 - 17023037
Alignment:
Q  45 aaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaa 144  Q
    ||||||| || ||| |||| ||||||||| |||||||| ||||||||||  | |||| ||| || ||||||||||| ||||  |||||||||||||||||    
T  17022934 aaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaa 17023033  T
Q  145 agaa 148  Q
    ||||    
T  17023034 agaa 17023037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 17060240 - 17060343
Alignment:
Q  45 aaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaa 144  Q
    ||||||| || ||| |||| ||||||||| |||||||| ||||||||||  | |||| ||| || ||||||||||| ||||  |||||||||||||||||    
T  17060240 aaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaa 17060339  T
Q  145 agaa 148  Q
    ||||    
T  17060340 agaa 17060343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 1269616 - 1269564
Alignment:
Q  106 attcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaa 158  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  1269616 attcagcttccaccaactctcgacctccgatccactgaaagaaaccataaaaa 1269564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 13337427 - 13337354
Alignment:
Q  86 aagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaag 159  Q
    ||||||||  |||||| |||||||||  | ||||| |||| ||||||| |||||||||||||||||||||||||    
T  13337427 aagctcctatctgaaagatcattcagtgttcaccacctctcgacctcctatccaccgaaagaaaccataaaaag 13337354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 10173479 - 10173567
Alignment:
Q  60 aacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaa 148  Q
    |||| ||||| |||||||||||| |||||||| |     ||| |||||||| ||||||||| |||| |||||||||| |||||||||||    
T  10173479 aacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaagaa 10173567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 58307 - 58196
Alignment:
Q  59 gaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaa 158  Q
    ||||| ||||| |||||||||| | |||||||| |  | |||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  58307 gaacaccaaagctgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctcgacctccgatccaccgaaagaaaccataaaaa 58208  T
Q  159 gcctaaatccaa 170  Q
    ||||||| ||||    
T  58207 gcctaaaaccaa 58196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 17656872 - 17657003
Alignment:
Q  28 aaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctcttg 127  Q
    |||||||||| ||||  ||||||| |  | |||||| |||||||||||||| ||  ||||||||||   ||||| |||||||||||||||||| || | |    
T  17656872 aaacacccctcaaaattaaactcccaatcatgaacaccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcg 17656971  T
Q  128 acctccgatccaccgaaagaaaccataaaaag 159  Q
    ||||||||||||||||||||||||||||||||    
T  17656972 acctccgatccaccgaaagaaaccataaaaag 17657003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 10248498 - 10248555
Alignment:
Q  103 atcattcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagc 160  Q
    |||| ||||||||||||| |||  | ||||||||||||| |||||||||||| |||||    
T  10248498 atcaatcagcttccaccacctcgcggcctccgatccaccaaaagaaaccatataaagc 10248555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 19516 - 19452
Alignment:
Q  106 attcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaagcctaaatccaa 170  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  19516 attcagcttccaccaactctcgacctccgatccaccgaaagaaaccataaaaagcccaaaaccaa 19452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 36921 - 36789
Alignment:
Q  26 aaaaacacccctaaaaaacaaactcctagacctgaacatcaaagttgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 125  Q
    |||||||||||||||||| || | ||  | |||||||| ||||| |||||||||  | ||||||||||  | |||| | |||||| |||||||||  |||    
T  36921 aaaaacacccctaaaaaataacccccc-gtcctgaacaccaaagctgagccacaatcgaaaagctcctaaccgaaagaccattcaacttccaccacatct 36823  T
Q  126 tgacctccgatccaccgaaagaaaccataaaaag 159  Q
     ||||||||||||||||||||||| |||||||||    
T  36822 cgacctccgatccaccgaaagaaatcataaaaag 36789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 42086 - 42138
Alignment:
Q  106 attcagcttccaccatctcttgacctccgatccaccgaaagaaaccataaaaa 158  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  42086 attcagcttccaccaactctcgacctccgatccactgaaagaaaccataaaaa 42138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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