View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_high_21 (Length: 318)
Name: NF17093_high_21
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 48543477 - 48543190
Alignment:
| Q |
9 |
acatcatcaccatcagttttcttcaatctcaaagctactcaacaattctcccaccactaccggtgtccatgatcttcttgaatgtccggtttgcaccaat |
108 |
Q |
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| T |
48543477 |
acatcatcaccatcagttttcttcaatctcaaagctactcaacaatgctcccaccactaccagtgtccatgatcttcttgaatgtccggtttgcaccaat |
48543378 |
T |
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| Q |
109 |
tcaatgtaccctccaatccatcaggtttgttatctgaatatcatccatgtatgttgcaagtctatgtttagataattactgctatctttttacggttttc |
208 |
Q |
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| T |
48543377 |
tcaatgtaccctccaatccatcaggtttgttatctgaatatcatccatgtatgttgcaagtctatgtttagataattactgctatctttttacggttttc |
48543278 |
T |
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| Q |
209 |
gtttctctttttcttggcaaatgttagttgattagtttagtttgttgcagccctcaaaagtagagataatttgttaatggtagggatcaaacct |
302 |
Q |
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| T |
48543277 |
gtttctctttttcttggcaaatgttagt------gattagtttgttgcagccctcaaaagtagagataatttgttaatggtagggatcaaacct |
48543190 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 9834165 - 9834231
Alignment:
| Q |
71 |
gtgtccatgatcttcttgaatgtccggtttgcaccaattcaatgtaccctccaatccatcaggtttg |
137 |
Q |
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| T |
9834165 |
gtgttcatgagcttcttgaatgtcctgtttgtactaattcaatgtaccctccaattcatcaggtttg |
9834231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 733059 - 733108
Alignment:
| Q |
88 |
gaatgtccggtttgcaccaattcaatgtaccctccaatccatcaggtttg |
137 |
Q |
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| T |
733059 |
gaatgtcctgtttgtaccaattcaatgtatcctccaattcatcaggtttg |
733108 |
T |
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