View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17093_high_24 (Length: 307)
Name: NF17093_high_24
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_high_24 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 45210741 - 45210434
Alignment:
| Q |
1 |
cataggatcacttaaactaactacttagcaaggtaacttgttgtctaagcaatctagttctaaatagtctcacattggaccaatgacatgaaaaagtgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45210741 |
cataggatcacttaaactaactacttagcaaggtaacttgttgtctaagcaatctagttctaactagtctcacattggaccaatgacatgaaaaagtgtt |
45210642 |
T |
|
| Q |
101 |
tacaagtggaagacatcctcttc-atacaagctgattttgaagggttgagttaggcataaggttttattaaactcttacttgtaatagccgcaacggtca |
199 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45210641 |
cacaagtggaagacatcctcttccatacaagctgattttgaagggttgagttaggcataaggttttattaaactcttatttgtaatagccgcaacggtca |
45210542 |
T |
|
| Q |
200 |
tttagaatgaattgagtttatattgtgatgtctaagaaacaattgaaactggacaggcggtagttacaataaacaactttcaacaatatcgtcatataac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45210541 |
tttagaatgaattgagtttatattgtgatgtctaagaaacaattgaaactggacaggcggtagttacaataaacaactttcaacaatatcgtcatataac |
45210442 |
T |
|
| Q |
300 |
agcacccg |
307 |
Q |
| |
|
|||||||| |
|
|
| T |
45210441 |
agcacccg |
45210434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 9101156 - 9101216
Alignment:
| Q |
3 |
taggatcacttaaactaactacttagcaaggtaa-cttgttgtctaagcaatctagttctaa |
63 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
9101156 |
taggatcactgaaactaactact-agcaaggtaaacttgctgtctaagcaatctagttctaa |
9101216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University