View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_high_34 (Length: 250)
Name: NF17093_high_34
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 32195579 - 32195426
Alignment:
| Q |
61 |
aaaaacataatccattatgagcagtcgatcgtcctgtaaatnnnnnnntaaagtgagaaacaatctttcttgataaaagaggaaaagtgagctaagaata |
160 |
Q |
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| T |
32195579 |
aaaaacataatccattatgagcagtcgaccgttctgtaaataaaaaaataaagtgagaaccaatctttcttgataaaagaggaaaagtgagctaagaata |
32195480 |
T |
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| Q |
161 |
at---gnnnnnnnnnnctatcattacctaataatcaagctggcggcacgggctg |
211 |
Q |
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| T |
32195479 |
atagaaaaaaaaaaaactatcattacctaataatcaagctggcggcacgggctg |
32195426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 32197858 - 32197681
Alignment:
| Q |
61 |
aaaaacataatccattatgagcagtcgatcgtcctgtaaatnnnnnnn----taaagtgagaaacaatctttcttgataaaagaggaaaagtgagctaag |
156 |
Q |
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|||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
32197858 |
aaaaacataacccattatgagcagtcgaccgtcctataaataaataaaaaattaaagtgagaaacaatctttcttgataaaagaggaaaagtaagctagg |
32197759 |
T |
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| Q |
157 |
aataatgnnnnnnnnnnctatcattacctaataatcaagctggcggcacgggctgctactcaatagtgggctcaggtg |
234 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| | || || || |||||||||| |
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| T |
32197758 |
aataatggaattttttttattcattacctaataatcaagctggcggcacgggctgcaaatcgatggtaggctcaggtg |
32197681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32195666 - 32195619
Alignment:
| Q |
1 |
cttcaagaaccctaatgagagaattcaaatgtaaaagtctatgtatcc |
48 |
Q |
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| T |
32195666 |
cttcaagaaccataatgagagaattcaaatgtaaaagtctatgtatcc |
32195619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 32194032 - 32193990
Alignment:
| Q |
203 |
cacgggctgctactcaatagtgggctcaggtgtctctgctcct |
245 |
Q |
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| T |
32194032 |
cacgggctgctactcaatagtgggctcaagtgtcactgctcct |
32193990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 32198019 - 32197979
Alignment:
| Q |
7 |
gaaccctaatgagagaattcaaatgtaaaagtctatgtatc |
47 |
Q |
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| T |
32198019 |
gaaccctaatgagataatccaaatgtaaaagtctatgtatc |
32197979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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