View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17093_high_36 (Length: 239)
Name: NF17093_high_36
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_high_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 32195674 - 32195899
Alignment:
| Q |
1 |
tgccaaaaacatttttaaacaatatgtggagattaataataaatgtctgcattcttnnnnnnnnnnnnn--tgtctacatgacttgctttttattacacg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32195674 |
tgccaaaaacatttttaaacaatatgtggagattaataataaatgtctgcattcttcaaaaaaaaaaaaaatgtctacatgacttgctttttattacacg |
32195773 |
T |
|
| Q |
99 |
attgatttttcttggactaaaagttgtcgtgcattatattcttcaccaactgaaattaaatgattatttctcaaaaactttttgatacattctaataaat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32195774 |
attgatttttcttggactaaaagttgtcgtgcattatattcttcaccaactgaaattaaatgattatttctcaaaaactttttgatacattctaataaat |
32195873 |
T |
|
| Q |
199 |
cagtaatttcacttttgtgaatgtaa |
224 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
32195874 |
caataatttcacttttgtgaatgtaa |
32195899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 32198034 - 32198238
Alignment:
| Q |
2 |
gccaaaaacatttttaaacaatatgtggagattaataataaatgtctgcattcttnnnnnnnnnnnnntgtctacatgacttgctttttattacacgatt |
101 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
32198034 |
gccaaaaacatttttaaaaaatatgtggagattaataataaatgtctacattgttcaaaaaaaaaaaatgtctatatgacttgctttttattacacgatt |
32198133 |
T |
|
| Q |
102 |
gatttttcttggactaaaagttgtcgtgcattatattcttcaccaactgaaattaaatgattatttctcaaaaactttttgatacattctaataaatcag |
201 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32198134 |
gatttttcttggactaaaagttgccgtgtattatattcttcaccaagtgaaattaaatgattatttctcaaaaactttttgatacattctaataaat-ag |
32198232 |
T |
|
| Q |
202 |
taattt |
207 |
Q |
| |
|
|||||| |
|
|
| T |
32198233 |
taattt |
32198238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University