View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17093_high_41 (Length: 216)
Name: NF17093_high_41
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_high_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 42629657 - 42629474
Alignment:
| Q |
20 |
agtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnnggataa |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
42629657 |
agtcatggatcaaactttttattgtgggtccgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatatacttgaaaaaaaaggataa |
42629558 |
T |
|
| Q |
120 |
caaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtgaaacaggcgagagctgccaaataat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42629557 |
caaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtgaaacaggccagagctgccaaataat |
42629474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 9575469 - 9575310
Alignment:
| Q |
20 |
agtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnnggataa |
119 |
Q |
| |
|
||||||||| ||||||||| || || | || |||| || |||| |||||||||| |||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
9575469 |
agtcatggaccaaactcttcatcgtagatccgttgttctatgttaagcatcctataggagttggtaaaaagggtgacatattctttagaaaaaaggataa |
9575370 |
T |
|
| Q |
120 |
caaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtga |
179 |
Q |
| |
|
|| ||| | | ||||||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
9575369 |
tcaattagctaggtttaatttaatcacccagaaaattgtagagcttggtgttaaaggtga |
9575310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 41859690 - 41859542
Alignment:
| Q |
20 |
agtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnnggataa |
119 |
Q |
| |
|
||||||||||||||||||| |||| |||| |||| || |||| ||| |||||||||||||||||| || || ||||| || || |||||| |
|
|
| T |
41859690 |
agtcatggatcaaactcttcgttgtaggtccgttgtccgatgttaagcgtcctattggagttggtaagaaaggagatatgtttttccggaaaaaggataa |
41859591 |
T |
|
| Q |
120 |
caaactagtttgttttaatttaatcacccaaaaaattgaagagcttggt |
168 |
Q |
| |
|
||||||||| |||||||||| |||||| | ||||||||| |||||| |
|
|
| T |
41859590 |
tgaactagttttgtttaatttaagcacccagagaattgaagaccttggt |
41859542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 45866901 - 45867058
Alignment:
| Q |
20 |
agtcatggatcaaactctttattgtgggtctgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatattcttgnnnnnnnnggataa |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| | ||||| || ||||||||| || ||||||| | |||||||||||||| ||| | |
|
|
| T |
45866901 |
agtcatggatcaaactttttattgtgggttctttgtcttgtgtcgaccatcctattagaattggtaagacgggtgatatattctttagaaaagaagatga |
45867000 |
T |
|
| Q |
120 |
caaactagtttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggt |
177 |
Q |
| |
|
||||||||| |||||||||| ||| || |||||||||||||||||||| |||||| |
|
|
| T |
45867001 |
tgaactagtttcatttaatttaagcacacagaaaattgaagagcttggtgttaaaggt |
45867058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University