View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_high_45 (Length: 201)
Name: NF17093_high_45
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 1558049 - 1557879
Alignment:
| Q |
17 |
cacagactcagtattatcaatcacattattgtttatttaactcaagaacacacacccaatattatcaatcacattattgtctatgtacctaattcataaa |
116 |
Q |
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| T |
1558049 |
cacacactcagtattatcaatcacattattgtttatttaactcaagaacacacacccaatattatcaatcacattattgtctatgtacctaa-acataaa |
1557951 |
T |
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| Q |
117 |
cagttgaatgtatttcttctagcacagtgagacatcttacttacctgcaatacttctcatctgaaaaagatg |
188 |
Q |
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| T |
1557950 |
cagttgaatgtatttcttctagcacagtgagacatcttacttacctgcaatacttctcatctgaaaaagatg |
1557879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 1558055 - 1558018
Alignment:
| Q |
59 |
caagaacacacacccaatattatcaatcacattattgt |
96 |
Q |
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| T |
1558055 |
caagaacacacactcagtattatcaatcacattattgt |
1558018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 23891377 - 23891279
Alignment:
| Q |
79 |
tatcaatcacattattgtctatgtacctaattcataaacagttgaatgtatttcttctagcacagtgagacatcttacttacctgcaatacttctcatc |
177 |
Q |
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| T |
23891377 |
tatcaatcacattattatttatctaactaattcattaatagttgaatgtatttcttttagaacagtgagacatattacttacctacaatacttctcatc |
23891279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 52936357 - 52936306
Alignment:
| Q |
133 |
ttctagcacagtgagacatcttacttacctgcaatacttctcatctgaaaaa |
184 |
Q |
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| T |
52936357 |
ttctagcacggtgagacttcttacttgcctacaatacttttcatctgaaaaa |
52936306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 52943992 - 52943941
Alignment:
| Q |
133 |
ttctagcacagtgagacatcttacttacctgcaatacttctcatctgaaaaa |
184 |
Q |
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||||||||| ||||||| |||||||| ||| |||||||| |||||||||||| |
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| T |
52943992 |
ttctagcacggtgagacttcttacttgcctacaatacttttcatctgaaaaa |
52943941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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