View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_10 (Length: 517)
Name: NF17093_low_10
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 499
Target Start/End: Complemental strand, 51915971 - 51915485
Alignment:
| Q |
10 |
attattctcgtttataaagtccaagcagctgatgataattgattgatagagtgagtgaagttgatttctggtgaattgcatttgtatcttcttacatttc |
109 |
Q |
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| T |
51915971 |
attattctcgtttataaagtccaagc---tgatgataattgattgatagggtga----aattgatttctggtgaattgcatttgtatcttcttacatttc |
51915879 |
T |
|
| Q |
110 |
aattttcatatacaatcattcatattataaacattaacattaatattgcttctgatgtaattgctt-ggttaaagaaaaacaaatcaagaagccatgaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | || | || ||||||||||||||||||||||||||||||||| |
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| T |
51915878 |
aattttcatatacaatcattcatattataaacattaacattaatattgcatagtcagtgcattctgaggttaaagaaaaacaaatcaagaagccatgaaa |
51915779 |
T |
|
| Q |
209 |
tcctcaacctcaactttgtatattctcttctacctcgtaatgctattattgtctatatcagtaatggcattgaccaacnnnnnnncttacatagttcaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |
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| T |
51915778 |
tcctcaacctcaactttgtatattctcttctacctcgtaatgctattattgtctgtaacagtaatggcattgaccaacaaaaaaacttacatagttcaca |
51915679 |
T |
|
| Q |
309 |
tgaaacacaacaaaaatgcatccatgtactctcccattctccaatcttcttcttct---gattctctactttacacctacactcacgcttacaacggttt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51915678 |
tgaaacacaacaaaaatgcatccatgtactctcccattctccaatcttcttcttcttctgattctctactttacacctacactcacgcttacaatggttt |
51915579 |
T |
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| Q |
406 |
cgctgtttcccttgacactaaacaagtgcaagaactgcgtagttctgattcagttctgggtgtatatgaagatactctgtactcactgcacact |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51915578 |
cgctgtttcccttgacactaaacaagtgcaagaactgcgtagttctgattcagttctcggtgtatatgaagatactctgtactcactgcacact |
51915485 |
T |
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