View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17093_low_11 (Length: 482)
Name: NF17093_low_11
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 10992715 - 10992253
Alignment:
| Q |
1 |
cgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatttagtatcttcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10992715 |
cgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatttagtatcttcac |
10992616 |
T |
|
| Q |
101 |
agcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctcttaatttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10992615 |
agcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctcttaatttct |
10992516 |
T |
|
| Q |
201 |
acataagagtatctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaagagtcataaacgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10992515 |
acataagagtatctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaagagtcataaacgt |
10992416 |
T |
|
| Q |
301 |
ggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctgcatttatgaaaactaatttaagaaaaatggtcattttggcacaggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10992415 |
ggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctggatttatgaaaactaatttaagaaaaatggtaattttggcacaggt |
10992316 |
T |
|
| Q |
401 |
tagaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatg |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10992315 |
tagaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatg |
10992253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 10930511 - 10930060
Alignment:
| Q |
1 |
cgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatttagtatcttcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
10930511 |
cgaccaatctaacaatattaacatgatggattctacccattgtaccaacttcattgaggaaatcttgcccgtttccttgtgaaacatttagtatcttcac |
10930412 |
T |
|
| Q |
101 |
agcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctcttaatttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||| |
|
|
| T |
10930411 |
agcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcgccaaaattatttgtgattcttttaatttct |
10930312 |
T |
|
| Q |
201 |
acataagagtatctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaagagtcataaacgt |
300 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||| | |
|
|
| T |
10930311 |
tcatatgagtatcttgtgggcttaagagctctataatcttctaaaaacttttctataatggcttgtttttctttcttttgtatgtaagagtcataaatat |
10930212 |
T |
|
| Q |
301 |
ggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctgcatttatgaaaactaatttaagaaaaatggtcattttggcacaggt |
400 |
Q |
| |
|
|||||| |||||| || |||||||||||||| | ||| |||| ||||||||||||||||||||||| |||||||||||||||| | ||||| | || | |
|
|
| T |
10930211 |
ggtagattgcaccagtcaacaagacaaaaaataacgaacctaaaattgatcctgcatttatgaaaattaatttaagaaaaatgataattttcatatagat |
10930112 |
T |
|
| Q |
401 |
tagaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactag |
452 |
Q |
| |
|
|| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
10930111 |
taaaattaaaataaagcaaacttaaacttaaaagctgacctgtgttgactag |
10930060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 463
Target Start/End: Complemental strand, 11040864 - 11040412
Alignment:
| Q |
11 |
aacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatttagtatcttcacagcaacaatg |
110 |
Q |
| |
|
||||||||||||||| || ||||||| |||||||| |||||||| ||||| ||||| || ||||| ||||||| |||||||||||||||||||||| | |
|
|
| T |
11040864 |
aacaatattaacatggtgtattctacccattgtacccacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacacta |
11040765 |
T |
|
| Q |
111 |
atttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctcttaatttctacataagagt |
210 |
Q |
| |
|
| ||||||||||||||||||| |||| |||||||||||||| |||||||||||| | || | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
11040764 |
aattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctcttaatttctacataagagt |
11040665 |
T |
|
| Q |
211 |
atctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaagagtcataaacgtggtagactgc |
310 |
Q |
| |
|
|||| || || |||||||||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| ||||| | |
|
|
| T |
11040664 |
atctggttggcttaagagctctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtcataaatatggaagactcc |
11040565 |
T |
|
| Q |
311 |
accggttaacaagacaaaaaacagcgatcctagaattgatcctgcatttatgaaaactaatttaagaaaaatggtcattttggcacaggttagaattaaa |
410 |
Q |
| |
|
||| | ||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| | | ||||| ||| |||| ||||||| |
|
|
| T |
11040564 |
accaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacgataattttcttacaagttataattaaa |
11040465 |
T |
|
| Q |
411 |
ataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatg |
463 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
11040464 |
agaaagcaaatttaaacttaaaagctgacctgtgtttactagagcctttgatg |
11040412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 11026171 - 11025708
Alignment:
| Q |
1 |
cgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatttagtatcttcac |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||| ||||||||||||||||| ||||| ||||| || ||||| ||||||| ||||||||||||||| |
|
|
| T |
11026171 |
cgaccaatcggacaatattaacatggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcac |
11026072 |
T |
|
| Q |
101 |
agcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctcttaatttct |
200 |
Q |
| |
|
||||||| | | ||||||||||||||||||| |||| |||||||||||||| |||||||||||| | || | || ||||||||||||||||| |||||| |
|
|
| T |
11026071 |
agcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctcttgatttct |
11025972 |
T |
|
| Q |
201 |
acataagagtatctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaagagtcataaacgt |
300 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||| |||| || ||||||||||||||||||| | |
|
|
| T |
11025971 |
acataagagtatctggtgggcttaagaactctatagtcttctaaaaacttttctacaattgcttgtttttctttctttagtatgtaagagtcataaatat |
11025872 |
T |
|
| Q |
301 |
ggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctgcatttatgaaaactaatttaagaaaaatggtcattttggcacaggt |
400 |
Q |
| |
|
|||||| | |||| | ||||||| |||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||| | ||| | |||||| |
|
|
| T |
11025871 |
ggtagattccaccaatcaacaagataaaaaacaatgatcctaaaattgatcctgcatttatgaaagctaacttaagaaaaatgataattatcttacaggt |
11025772 |
T |
|
| Q |
401 |
t-agaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatg |
463 |
Q |
| |
|
| ||||| |||| |||||||||| |||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
11025771 |
taagaataaaaacgaagcaaatttgaacttaaaagctgacctgtgttcactagagcctttgatg |
11025708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 381
Target Start/End: Complemental strand, 10991416 - 10991311
Alignment:
| Q |
276 |
ttcagtatgtaagagtcataaacgtggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctgcatttatgaaaactaatttaa |
375 |
Q |
| |
|
||||| ||||||||||| |||| || ||||||||| |||| | ||||| |||||||| ||||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
10991416 |
ttcagaatgtaagagtcgtaaatatgatagactgcagcggtgagcaagataaaaaacattgatcctaaaattgaccctgcatttatgaaaaacaatttaa |
10991317 |
T |
|
| Q |
376 |
gaaaaa |
381 |
Q |
| |
|
||||| |
|
|
| T |
10991316 |
aaaaaa |
10991311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University