View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_12 (Length: 479)
Name: NF17093_low_12
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 38363125 - 38362688
Alignment:
| Q |
19 |
caaaggagtaaggatccattggcttaaatgaaagactgtattattaattatggagcctaaaatgtagttaatgtttgcatttaaataacacattctaatg |
118 |
Q |
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| T |
38363125 |
caaaggagtaaggatccattagtttaaatgaaagactgaattattaattatagagcctaaaatgtagttaatgtttgcatttaaataacacattataatg |
38363026 |
T |
|
| Q |
119 |
attttcctgcaatttttacaattattattctcatatttcacgttttcctaataaatatgacaatgaggaagaaaaggggataatatcatgtgattcccta |
218 |
Q |
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| T |
38363025 |
attttcttgcaatttttacaattattattctcatatttcacgtgttcctaataaatatgacaatgaggaagaaaaggggataatatcatgtgattaccta |
38362926 |
T |
|
| Q |
219 |
gcttagctacagtactattgcctgcaaagtttaattaaggaaccatataattgagccgttgacaaaatttaataaggtaatcatattataaacgtaatgc |
318 |
Q |
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| T |
38362925 |
gcttagctacagtactattgcctgcaaagtttaattaaggaaccatataattgagccgttgacaaaatttaataaggtaatcatattataaacgtaatgc |
38362826 |
T |
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| Q |
319 |
tgatgaagacaattgtattctatactgtggggaatttaatgttgttttcctcttgagttccctacctacgtgtaaggtactctatatcaatcaattggta |
418 |
Q |
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| T |
38362825 |
tgatgaagacaattgtattctatactgtggggaatttaatgttgttttcctcttgagttcc----ctacgtgtaaggtactctaaatcaatcaattggta |
38362730 |
T |
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| Q |
419 |
tgtgaggcaccaataaatgcaaatgagtctgactgttaccaa |
460 |
Q |
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| T |
38362729 |
tgtgaggcaccaataaatgcaaatgagtctgactgttaccaa |
38362688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 38369247 - 38369202
Alignment:
| Q |
203 |
atcatgtgattccctagcttagctacag-tactattgcctgcaaag |
247 |
Q |
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| T |
38369247 |
atcatgtgattccctagcttagctacagatagtattggctgcaaag |
38369202 |
T |
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