View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_16 (Length: 453)
Name: NF17093_low_16
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 15 - 433
Target Start/End: Complemental strand, 13300032 - 13299620
Alignment:
| Q |
15 |
aaggacaagtctattgagtcaccttctataccctttgtttgaataagtgttagagattttttaactaaagttcaagtttggtacaccatgatcaatgctt |
114 |
Q |
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| T |
13300032 |
aaggacaagtctattgagtcaccttctataccctttgtttgaataagtgttagagattttttaactaaagttcaagtttggtacaccatga---atgctt |
13299936 |
T |
|
| Q |
115 |
tttctctatactatgctgtcattggcctaacttcatgttctcactaacgacaaagtttatctgttggaatcacaaacaagtaccttatagtttatgtatc |
214 |
Q |
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| T |
13299935 |
ttgctctatactgtgctgtcattggcctaacttcatgttctcactaacgacaaagtttatcagttggaatcacaaacaagtaccttattgtttatgtaac |
13299836 |
T |
|
| Q |
215 |
ttcaacaatgccatcatcaaatataattttgtttaggaacactatccgtggctggctggccgcaattgttatcgatcctggcatggagtttttgatgttt |
314 |
Q |
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| T |
13299835 |
ttcaacaatgccatcatcaaaactaattttgtttaggaacactatccgtggccggctggccgcaattgttatcgatcctgacatagagtttttgatgttt |
13299736 |
T |
|
| Q |
315 |
ccgcgaccacgttgagattgcgcaaaatctgttaaatttgacagaaattatgcatgatatatcaagatttgtaatgcgaccgcaaccatgattttaaatt |
414 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| |
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| T |
13299735 |
ccgcgaccacgttgagatt--gcaaaatctgttaaatttgacagaaattatgcatgatatatcaagatttgcaatgtgaccgcaaccctgattttaaatt |
13299638 |
T |
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| Q |
415 |
atggttgcaggttacgttg |
433 |
Q |
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| T |
13299637 |
gtggtt-ctggttacgttg |
13299620 |
T |
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