View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17093_low_18 (Length: 408)
Name: NF17093_low_18
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 27 - 393
Target Start/End: Complemental strand, 4725773 - 4725406
Alignment:
| Q |
27 |
tatatcataaggtgggaactgggaaatatgaaatgttgcnnnnnnnnntctcatcaaataatgttgcaacttaaatttagttccatgtcnnnnnnnnnn- |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4725773 |
tatatcataaggtgggaactgggaaatatgaaatgttgcaaaaaaaa-tctcatcaaataatgttgcaacttaaatttagttccatgtcaaaaaaaaaaa |
4725675 |
T |
|
| Q |
126 |
-cttaaatttagtgtatatatatgtacctcaataaaatagttaagataaattggtgtttggagaagctgtgactgattaattagtgttaatgcatgcaaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4725674 |
acttaaatttagtgtatatatatgtacctcaataaaatagttaagataaattggtgtatggagaagttgtgactgattaattagtgttaatgcatgcaaa |
4725575 |
T |
|
| Q |
225 |
gtatatattaccatgctattggtaattttttgtgatatagaaaattaatatgggtatactgcaatagttacagcataaagtaaaatcagtgccaaaaatt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4725574 |
gtatatattaccatgctattggtaattttttgtgatatagaaaattaatatgggtatactgcaatagttacaacataaagtaaaatcagtgccaaaaatt |
4725475 |
T |
|
| Q |
325 |
agagatgaaaaaacctaaactcatcattattttcttcatcacaaaatttagtgaagaaaagtattttct |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4725474 |
agagatgaaaaaacctaaactcatcattattttcttcatcacaaaatttagttaagaaaagtattttct |
4725406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 4725413 - 4725372
Alignment:
| Q |
352 |
tattttcttcatcacaaaatttagtgaagaaaagtattttct |
393 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
4725413 |
tattttcttcatcacaaagtttagtgaaaaaaagtattttct |
4725372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University