View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17093_low_19 (Length: 391)

Name: NF17093_low_19
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17093_low_19
NF17093_low_19
[»] chr1 (11 HSPs)
chr1 (8-376)||(14524764-14525115)
chr1 (220-370)||(14465763-14465913)
chr1 (239-370)||(15035212-15035343)
chr1 (223-370)||(15015723-15015870)
chr1 (223-370)||(14480661-14480808)
chr1 (235-370)||(15009335-15009470)
chr1 (235-370)||(15023452-15023587)
chr1 (235-370)||(15030433-15030568)
chr1 (300-370)||(15000794-15000864)
chr1 (235-370)||(14501885-14502020)
chr1 (300-370)||(14534750-14534820)
[»] scaffold0400 (2 HSPs)
scaffold0400 (224-376)||(10671-10823)
scaffold0400 (235-354)||(5183-5302)
[»] scaffold0365 (2 HSPs)
scaffold0365 (224-376)||(11314-11466)
scaffold0365 (235-354)||(5827-5946)
[»] scaffold0289 (1 HSPs)
scaffold0289 (276-364)||(19692-19780)
[»] chr7 (3 HSPs)
chr7 (286-364)||(16170721-16170799)
chr7 (276-364)||(15666824-15666912)
chr7 (276-364)||(15680323-15680411)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 376
Target Start/End: Complemental strand, 14525115 - 14524764
Alignment:
Q  8 agataatactatctttattttttcagcaaatttagtgataaataaatactctttttgttttattttataatcttacgttgtttacgtatttacgttgttt 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                     
T  14525115 agataatgctatctttattttttcagcaaatttagtgataaataaatactttttttgttttattttataatcttacgttgttt----------------- 14525033  T
Q  108 gcctatataaataccaccaacatcgcccactaatcttcacaaaaaatctctcttcttatgtgattgactagttctagagcaatcatgcttttatttccaa 207  Q
    ||||| |||||||||||| |||||||||||||| |||||    |||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||    
T  14525032 gcctacataaataccacccacatcgcccactaaccttcatcgtaaatctatcttgttatatgattgactagttatagagcaatcatgcttttatttccaa 14524933  T
Q  208 tgcgttgtgtttttgtgttcttttgtatgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatg 307  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||    
T  14524932 tgcgttgtgtttttttgttcttttgtatgtttgtaatggccacatcacctcttgcttcagcaaatatgcaaagcagcgaggcaaatgctttattgaaatg 14524833  T
Q  308 gaaagcaagctttgacaaccaaagcaagtcattgctctcttcatggagtggtaataagccttgcaattg 376  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  14524832 gaaagcaagctttgacaaccaaagcaagtctttgctctcttcatggattggtaataagccttgcaattg 14524764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 370
Target Start/End: Original strand, 14465763 - 14465913
Alignment:
Q  220 ttgtgttcttttgtatgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctt 319  Q
    |||||||||| | | ||||||| ||||||| |||| ||||| || || |||||||  ||||||||||  || ||||| | ||||| ||||||||||||||    
T  14465763 ttgtgttcttctatgtgtttgttatggccacatcatctcatactgcaacaaaaatcaaaagcagtgagacagatgctctgttgaagtggaaagcaagctt 14465862  T
Q  320 tgacaaccaaagcaagtcattgctctcttcatggagtggtaataagccttg 370  Q
    |||||||||||||||| || | ||||||||||||| ||||||||| |||||    
T  14465863 tgacaaccaaagcaagacactactctcttcatggattggtaataatccttg 14465913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 239 - 370
Target Start/End: Original strand, 15035212 - 15035343
Alignment:
Q  239 tgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaagtca 338  Q
    |||||| |||| ||||||||||||| || |||||||  || ||||||| ||| ||||| | ||||| |||||||||||| |||||||||| | || | ||    
T  15035212 tgtaattgccacatcacctcatgctgcaacaaaaatcaaaggcagtgaggcagatgctctgttgaagtggaaagcaagccttgacaaccacaacagggca 15035311  T
Q  339 ttgctctcttcatggagtggtaataagccttg 370  Q
    |||||||||||||||| ||||||||| |||||    
T  15035312 ttgctctcttcatggattggtaataatccttg 15035343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 370
Target Start/End: Original strand, 15015723 - 15015870
Alignment:
Q  223 tgttcttttgtatgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttga 322  Q
    ||||||||| | |||||||||||  || ||||||||||||| || |||||||  || || |||| ||| |  || | ||||| ||||||| |||||||||    
T  15015723 tgttcttttatgtgtttgtaatgatcaaatcacctcatgctgcaacaaaaatcaaaggccgtgaggcagagtctctgttgaagtggaaagaaagctttga 15015822  T
Q  323 caaccaaagcaagtcattgctctcttcatggagtggtaataagccttg 370  Q
    ||||||||||||  |||| ||||||||||||| ||||||||| |||||    
T  15015823 caaccaaagcaaagcattactctcttcatggattggtaataatccttg 15015870  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 370
Target Start/End: Original strand, 14480661 - 14480808
Alignment:
Q  223 tgttcttttgtatgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttga 322  Q
    ||||||||||| ||||||||||||  | |||||||||||||   |||||||  ||| |||  || ||| ||||| | || || |||||||||||||||||    
T  14480661 tgttcttttgtgtgtttgtaatggttacatcacctcatgctgatgcaaaaaaccaaggcaacgaggcagatgctcttttaaagtggaaagcaagctttga 14480760  T
Q  323 caaccaaagcaagtcattgctctcttcatggagtggtaataagccttg 370  Q
    ||| |||||||||  | | ||||||||||||| ||||||||| |||||    
T  14480761 caaacaaagcaaggaaatactctcttcatggattggtaataatccttg 14480808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 15009335 - 15009470
Alignment:
Q  235 tgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaa 334  Q
    |||||||||| || | ||||||||||||| || ||||||| ||| | || || ||  ||||| ||||||| |||||| ||||| |||||||||| ||||     
T  15009335 tgtttgtaattgcaacatcacctcatgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaatcaagccttgacaaccatagcag 15009434  T
Q  335 gtcattgctctcttcatggagtggtaataagccttg 370  Q
    | |||| ||||||||||||| ||||||||| |||||    
T  15009435 ggcatttctctcttcatggattggtaataatccttg 15009470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 15023452 - 15023587
Alignment:
Q  235 tgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaa 334  Q
    |||||||||| || | ||||||||||||| || ||||||| ||| | || || ||  ||||| ||||||| |||||| ||||| |||||||||| ||||     
T  15023452 tgtttgtaattgcaacatcacctcatgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaaacaagccttgacaaccatagcag 15023551  T
Q  335 gtcattgctctcttcatggagtggtaataagccttg 370  Q
    | |||| ||||||||||||| ||||||||| |||||    
T  15023552 ggcatttctctcttcatggattggtaataatccttg 15023587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 15030433 - 15030568
Alignment:
Q  235 tgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaa 334  Q
    |||||||||| || | ||||||||||||| || ||||||| ||| | || || ||  ||||| ||||||| |||||| ||||| |||||||||| ||||     
T  15030433 tgtttgtaattgcaacatcacctcatgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaatcaagccttgacaaccatagcag 15030532  T
Q  335 gtcattgctctcttcatggagtggtaataagccttg 370  Q
    | |||| ||||||||||||| ||||||||| |||||    
T  15030533 ggcatttctctcttcatggattggtaataatccttg 15030568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 370
Target Start/End: Original strand, 15000794 - 15000864
Alignment:
Q  300 ttgaaatggaaagcaagctttgacaaccaaagcaagtcattgctctcttcatggagtggtaataagccttg 370  Q
    ||||||||||| |||||| |||||||||| |||| | |||||||||||||||||| ||| ||||| |||||    
T  15000794 ttgaaatggaaggcaagccttgacaaccacagcagggcattgctctcttcatggattggcaataatccttg 15000864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 14501885 - 14502020
Alignment:
Q  235 tgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaa 334  Q
    |||||||||| || | ||||||||||||| || ||| ||| ||| | || || ||  ||||| | ||||| |||||||||||| |||||||| | || |     
T  14501885 tgtttgtaattgcaacatcacctcatgctgcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaacaacagtag 14501984  T
Q  335 gtcattgctctcttcatggagtggtaataagccttg 370  Q
    | ||||||| |||||||||| ||||||||| |||||    
T  14501985 ggcattgctttcttcatggaatggtaataatccttg 14502020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 370
Target Start/End: Complemental strand, 14534820 - 14534750
Alignment:
Q  300 ttgaaatggaaagcaagctttgacaaccaaagcaagtcattgctctcttcatggagtggtaataagccttg 370  Q
    ||||| |||||||||||| |||||||||| |||||  | |||||||||||||||| ||| ||||| |||||    
T  14534820 ttgaagtggaaagcaagccttgacaaccatagcaatgctttgctctcttcatggattggcaataatccttg 14534750  T

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Target: scaffold0400 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 224 - 376
Target Start/End: Original strand, 10671 - 10823
Alignment:
Q  224 gttcttttgtatgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgac 323  Q
    |||||||||||||||||||||||| | |||||||||||||||  |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  10671 gttcttttgtatgtttgtaatggcaacatcacctcatgcttcgtcaaaaacgcaaagcagcgaggcaaatgctttattgaaatggaaagcaagctttgac 10770  T
Q  324 aaccaaagcaagtcattgctctcttcatggagtggtaataagccttgcaattg 376  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10771 aaccaaagcaagtcattgctctcttcatggattggtaataagccttgcaattg 10823  T

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Target: scaffold0400; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 354
Target Start/End: Original strand, 5183 - 5302
Alignment:
Q  235 tgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaa 334  Q
    |||||||||| |||| ||||||||||||  || ||||||| ||| |||| |||| | ||| | ||||||| ||||||||||||||||||||||| || |     
T  5183 tgtttgtaatagccacatcacctcatgccacaacaaaaatccaaggcagcgaagtagatgttctattgaagtggaaagcaagctttgacaaccatagtag 5282  T
Q  335 gtcattgctctcttcatgga 354  Q
    | ||||||||||||||||||    
T  5283 ggcattgctctcttcatgga 5302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 224 - 376
Target Start/End: Original strand, 11314 - 11466
Alignment:
Q  224 gttcttttgtatgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgac 323  Q
    |||||||||||||||||||||||| | |||||||||||||||  |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  11314 gttcttttgtatgtttgtaatggcaacatcacctcatgcttcgtcaaaaacgcaaagcagcgaggcaaatgctttattgaaatggaaagcaagctttgac 11413  T
Q  324 aaccaaagcaagtcattgctctcttcatggagtggtaataagccttgcaattg 376  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11414 aaccaaagcaagtcattgctctcttcatggattggtaataagccttgcaattg 11466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 354
Target Start/End: Original strand, 5827 - 5946
Alignment:
Q  235 tgtttgtaatggccatatcacctcatgcttcagcaaaaatgcaaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaa 334  Q
    |||||||||| |||| ||||||||||||  || ||||||| ||| |||| |||| | ||| | ||||||| ||||||||||||||||||||||| || |     
T  5827 tgtttgtaatagccacatcacctcatgccacaacaaaaatccaaggcagcgaagtagatgttctattgaagtggaaagcaagctttgacaaccatagtag 5926  T
Q  335 gtcattgctctcttcatgga 354  Q
    | ||||||||||||||||||    
T  5927 ggcattgctctcttcatgga 5946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 19780 - 19692
Alignment:
Q  276 caaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaagtcattgctctcttcatggagtggtaataa 364  Q
    |||||||  ||||||| |||||| ||||| |||| ||||||  |||||||||||||| |  | ||||| |||||||||||||| |||||    
T  19780 caaagcaaagaagcaagtgctttgttgaagtggatagcaagtcttgacaaccaaagccaaactttgctatcttcatggagtggcaataa 19692  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 16170721 - 16170799
Alignment:
Q  286 aagcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaagtcattgctctcttcatggagtggtaataa 364  Q
    |||||| |||||| ||||| |||||||||||  |||||||||| ||| |  | ||||| |||||||||||||| |||||    
T  16170721 aagcaagtgctttgttgaagtggaaagcaagtcttgacaaccatagccaaactttgctatcttcatggagtggcaataa 16170799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 15666912 - 15666824
Alignment:
Q  276 caaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgacaaccaaag-caagtcattgctctcttcatggagtggtaataa 364  Q
    |||||||  ||||||| |||||| ||||| |||||||||||  ||||||||||||| |||||  ||| | |||||||||||||| |||||    
T  15666912 caaagcaaagaagcaagtgctttgttgaagtggaaagcaagtcttgacaaccaaagccaagt-tttgttatcttcatggagtggcaataa 15666824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 15680411 - 15680323
Alignment:
Q  276 caaagcagtgaagcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaagtcattgctctcttcatggagtggtaataa 364  Q
    ||||| || ||||||| |||||| ||||| |||||||||||  |||| ||||||||| |  | ||| | |||||||||||||| |||||    
T  15680411 caaagtagagaagcaagtgctttgttgaagtggaaagcaagtcttgataaccaaagccaagctttgttatcttcatggagtggcaataa 15680323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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