View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_20 (Length: 384)
Name: NF17093_low_20
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 31131357 - 31131038
Alignment:
| Q |
13 |
caaaggtggaggaaggtatagtttggaggatgtcagaaatccattgtatgaggcggtggaagttggctgcaatgggaaacacagaaccaatgatagggta |
112 |
Q |
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| T |
31131357 |
caaaggtggaggaaggtatagtttggaggatgtcagaaatccattgtatgaggcggtggaagttggctgcaatgggaaacacagaacaaatgatagtgta |
31131258 |
T |
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| Q |
113 |
tgagttggggattttggagggtgttttgcattgnnnnnnngtggctaagaataagaacgaaacgagagttgcagagaaaagcaacaaagaaaccaatgtt |
212 |
Q |
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| T |
31131257 |
tgagttggggattttggagagtgttttgcattgtttttttatggttaagaataggaacgaaacaagagttgcagagaaaagcaacaaagaaaccaatgtt |
31131158 |
T |
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| Q |
213 |
tcgggttccatttggtacgtaagatacttca-------------atgacgatctctttttcactcgtaaaagtcaataaatacttcaggacaattattaa |
299 |
Q |
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| T |
31131157 |
tcgggttccatttggtacgtaagatacttcaatcggtgtcatccatgacgatctctttctcactcgtaaaagtcaataaatagttcaagacaattattaa |
31131058 |
T |
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| Q |
300 |
agtctatttattttccactc |
319 |
Q |
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| T |
31131057 |
agtctactgattttccactc |
31131038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 31126493 - 31126409
Alignment:
| Q |
154 |
tggctaagaataagaacgaaacgagagttgcagagaaaagcaacaaagaaaccaatgtttcgggttccatttggtacgtaagata |
238 |
Q |
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| T |
31126493 |
tggctaagaataagaacgacacgagagttacagagtaaagtaagaaagaaaccaatatttcgagttccatttggtacgtaagata |
31126409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 31077176 - 31077102
Alignment:
| Q |
153 |
gtggctaagaataagaacgaaacgagagttgcagagaaaagcaacaaagaaaccaatgtttcgggttccatttgg |
227 |
Q |
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| T |
31077176 |
gtggctaagaataagaaccaaacgagtggtgctgagaaaagtaacaaagaaagcaaagtttcgagttccatttgg |
31077102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 31077329 - 31077232
Alignment:
| Q |
15 |
aaggtggaggaaggtatagtttggaggatgtcagaaatccattgtatgaggcggtggaagttggctgcaatgggaaacacagaaccaatgatagggta |
112 |
Q |
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| T |
31077329 |
aaggtggaagaagggatggtttggaggatgtcggagatccagtggacacggcggtggaagttggcgtaaatggaaaagacagaaccaatgatagggta |
31077232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 31126647 - 31126583
Alignment:
| Q |
15 |
aaggtggaggaaggtatagtttggaggatgtcagaaatccattgtatgaggcggtggaagttggc |
79 |
Q |
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| T |
31126647 |
aaggtggaggaagggatggtttggagaatatcagctatccattgtatgcggcggtggaagttggc |
31126583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 31125933 - 31125881
Alignment:
| Q |
267 |
aaaagtcaataaatacttcaggacaattattaaagtctatttattttccactc |
319 |
Q |
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| T |
31125933 |
aaaagtaaataaattgtttaagacaattattaaagtctatttattttccactc |
31125881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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