View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_23 (Length: 317)
Name: NF17093_low_23
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 6989431 - 6989119
Alignment:
| Q |
1 |
ccacgacctggattttctgattctttttctaatattggtaataattaatttcaatccttttatctttactctttaattccatctctactnnnnnnnggtt |
100 |
Q |
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| T |
6989431 |
ccacgacctggattttctgattctttttctaatattggtaataattaatttcaatccttttatctttactctttaattccatctctactaaaagaaggtt |
6989332 |
T |
|
| Q |
101 |
gaattaccgaacaaattagagacggatttcattttttccgtc--------------actaattcaataagaaaacagttgaattatttatttgctgtact |
186 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6989331 |
gaattaccgaccaaattagagacggatttcattttttccgtctcaaattttccgtcactaattcaataagaaaacagttcaattatttatttgctgtact |
6989232 |
T |
|
| Q |
187 |
aatgtttgaatgaatgtaccatatatgttattagacttgtcagttttagagaccgaggacggagaccaatccgagtgttcacctagaagtcaagaatctg |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6989231 |
aatgtttgaatgaatgtaccatatatgttattagacttgtcagttttagagactgagaacggagaccaatccgagtattcacctagaagtcaagaatctg |
6989132 |
T |
|
| Q |
287 |
atacaccaagttc |
299 |
Q |
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||||||||||||| |
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| T |
6989131 |
atacaccaagttc |
6989119 |
T |
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