View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_28 (Length: 280)
Name: NF17093_low_28
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 263
Target Start/End: Complemental strand, 41892106 - 41891832
Alignment:
| Q |
2 |
aggaggaggaggagagtaaagggttgcacagataacacgggtggaggaggtggcgagaccaaacattctctgctctgtttctccgagtcgccgtaatttt |
101 |
Q |
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| T |
41892106 |
aggaggaggaggagagtaaagggttgcacagagaacacgggtggaggaggtggcgagaccaaacattctctgctctgtttctccgagtcgccgtaatttt |
41892007 |
T |
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| Q |
102 |
cagtattttaagattgttaatattcgtatagttattgaagattcatgtgattgttgtttgcacagattcgggaaaatatttgg-------------agaa |
188 |
Q |
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| T |
41892006 |
cagtattttaagattgttaatattcgtatcgttattgaagattcatgtgattgttgtttgcacagattcgggaaaatatttggaaacaaatcctgtagaa |
41891907 |
T |
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| Q |
189 |
tatgtgcaaagtaatctgagagggagggataggaacggcggaaaaccgttgaaacggggtagagggggaaaagtg |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41891906 |
tatgtgcaaagtaatctgagagggagggataggaacggcggaaagccgttgaaacggggtagagggggaaaagtg |
41891832 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 3730728 - 3730762
Alignment:
| Q |
11 |
aggagagtaaagggttgcacagataacacgggtgg |
45 |
Q |
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| T |
3730728 |
aggagagtaaagggttgcacagagaacacgggtgg |
3730762 |
T |
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