View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17093_low_3 (Length: 578)

Name: NF17093_low_3
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17093_low_3
NF17093_low_3
[»] chr8 (22 HSPs)
chr8 (181-563)||(32532985-32533367)
chr8 (1-125)||(32533423-32533547)
chr8 (211-317)||(32521721-32521827)
chr8 (213-279)||(3404500-3404566)
chr8 (213-279)||(33230973-33231039)
chr8 (213-279)||(36102816-36102882)
chr8 (235-279)||(1942001-1942045)
chr8 (235-279)||(13865040-13865084)
chr8 (235-279)||(25033469-25033513)
chr8 (235-279)||(29612080-29612124)
chr8 (235-279)||(34272604-34272648)
chr8 (213-277)||(34349806-34349870)
chr8 (228-279)||(7079935-7079986)
chr8 (202-272)||(33896515-33896585)
chr8 (213-279)||(36906276-36906342)
chr8 (213-279)||(37659457-37659523)
chr8 (194-295)||(39194004-39194105)
chr8 (349-377)||(2457943-2457971)
chr8 (239-279)||(2474719-2474759)
chr8 (235-279)||(15108212-15108256)
chr8 (235-279)||(31297296-31297340)
chr8 (235-279)||(34148527-34148571)
[»] chr3 (32 HSPs)
chr3 (194-279)||(42157725-42157810)
chr3 (213-279)||(25428757-25428823)
chr3 (195-296)||(42159804-42159904)
chr3 (213-279)||(2420748-2420814)
chr3 (213-279)||(23163612-23163678)
chr3 (213-279)||(41961903-41961969)
chr3 (213-279)||(43007448-43007514)
chr3 (189-326)||(44395712-44395852)
chr3 (213-279)||(46017294-46017360)
chr3 (213-279)||(49860925-49860991)
chr3 (199-279)||(105085-105165)
chr3 (235-279)||(36796513-36796557)
chr3 (213-277)||(38593043-38593107)
chr3 (235-279)||(39499287-39499331)
chr3 (235-279)||(47714621-47714665)
chr3 (235-279)||(47789394-47789438)
chr3 (235-279)||(55439673-55439717)
chr3 (213-279)||(30121448-30121514)
chr3 (213-279)||(30131812-30131878)
chr3 (235-277)||(38526244-38526286)
chr3 (213-279)||(43237379-43237445)
chr3 (237-279)||(44412105-44412147)
chr3 (207-277)||(44979488-44979558)
chr3 (344-377)||(11040901-11040934)
chr3 (235-276)||(17642681-17642722)
chr3 (228-277)||(19148258-19148307)
chr3 (199-296)||(23613081-23613178)
chr3 (235-295)||(7435586-7435646)
chr3 (213-277)||(7661127-7661191)
chr3 (235-279)||(31178195-31178239)
chr3 (235-279)||(38515326-38515370)
chr3 (235-279)||(46312368-46312412)
[»] scaffold0026 (1 HSPs)
scaffold0026 (193-277)||(74606-74690)
[»] chr2 (31 HSPs)
chr2 (213-273)||(29880859-29880919)
chr2 (235-279)||(18780473-18780517)
chr2 (194-279)||(14196380-14196461)
chr2 (213-279)||(4042053-4042119)
chr2 (213-279)||(8410856-8410922)
chr2 (213-279)||(13765865-13765931)
chr2 (213-279)||(36567204-36567270)
chr2 (213-279)||(38293977-38294043)
chr2 (213-279)||(44020428-44020494)
chr2 (235-279)||(3038895-3038939)
chr2 (235-279)||(3119800-3119844)
chr2 (235-279)||(8990911-8990955)
chr2 (235-279)||(19382966-19383010)
chr2 (200-296)||(35812405-35812501)
chr2 (213-276)||(38023373-38023436)
chr2 (208-279)||(38216438-38216509)
chr2 (213-279)||(14008255-14008321)
chr2 (235-277)||(18826174-18826216)
chr2 (235-277)||(26434454-26434496)
chr2 (213-279)||(40357546-40357612)
chr2 (228-277)||(9087406-9087455)
chr2 (235-279)||(8555724-8555768)
chr2 (235-279)||(10165502-10165546)
chr2 (235-279)||(12963919-12963963)
chr2 (235-279)||(13767507-13767551)
chr2 (235-279)||(31550210-31550254)
chr2 (235-279)||(31899304-31899348)
chr2 (213-273)||(32243570-32243630)
chr2 (199-271)||(42644742-42644814)
chr2 (235-279)||(44137224-44137268)
chr2 (235-295)||(44656698-44656758)
[»] chr6 (13 HSPs)
chr6 (213-279)||(23095054-23095120)
chr6 (213-279)||(5825421-5825487)
chr6 (213-279)||(24734969-24735035)
chr6 (213-279)||(26574321-26574387)
chr6 (248-297)||(14933570-14933619)
chr6 (213-277)||(34914718-34914782)
chr6 (236-279)||(1029382-1029425)
chr6 (236-279)||(31345320-31345363)
chr6 (213-279)||(26481057-26481123)
chr6 (213-279)||(29241759-29241825)
chr6 (238-279)||(4909866-4909907)
chr6 (215-276)||(22817269-22817330)
chr6 (212-289)||(33939048-33939125)
[»] chr4 (27 HSPs)
chr4 (201-279)||(32485916-32485994)
chr4 (213-295)||(52594552-52594634)
chr4 (194-279)||(7182098-7182183)
chr4 (213-279)||(31530108-31530174)
chr4 (213-279)||(32060735-32060801)
chr4 (213-279)||(37756649-37756715)
chr4 (213-279)||(38317154-38317220)
chr4 (213-279)||(47669899-47669965)
chr4 (213-279)||(49936591-49936657)
chr4 (213-279)||(42649911-42649979)
chr4 (235-279)||(3126960-3127004)
chr4 (235-279)||(13270042-13270086)
chr4 (213-277)||(17873287-17873351)
chr4 (235-279)||(41363760-41363804)
chr4 (235-279)||(49404571-49404615)
chr4 (195-290)||(46176589-46176684)
chr4 (213-276)||(48830740-48830803)
chr4 (188-259)||(50088108-50088179)
chr4 (213-275)||(24291478-24291540)
chr4 (213-279)||(32648930-32648996)
chr4 (213-279)||(41844524-41844590)
chr4 (344-377)||(27938858-27938891)
chr4 (349-377)||(255840-255868)
chr4 (181-253)||(27938696-27938768)
chr4 (235-279)||(40423021-40423065)
chr4 (229-277)||(46669887-46669935)
chr4 (229-277)||(48620380-48620428)
[»] chr5 (24 HSPs)
chr5 (226-326)||(24171-24272)
chr5 (181-279)||(5696476-5696572)
chr5 (235-279)||(2021069-2021113)
chr5 (213-277)||(6491275-6491339)
chr5 (235-279)||(10295572-10295616)
chr5 (181-275)||(13839454-13839547)
chr5 (235-279)||(17092986-17093030)
chr5 (235-279)||(27480120-27480164)
chr5 (194-296)||(31632909-31633008)
chr5 (341-372)||(12150563-12150594)
chr5 (228-279)||(35704987-35705038)
chr5 (213-279)||(4648913-4648979)
chr5 (213-279)||(19389754-19389820)
chr5 (213-279)||(25027011-25027077)
chr5 (341-375)||(25626664-25626698)
chr5 (213-279)||(35701492-35701558)
chr5 (213-279)||(38302284-38302350)
chr5 (213-279)||(41695066-41695132)
chr5 (228-277)||(1935048-1935097)
chr5 (228-277)||(4841650-4841699)
chr5 (228-277)||(26018832-26018881)
chr5 (238-279)||(37508341-37508382)
chr5 (235-279)||(26149692-26149736)
chr5 (239-279)||(34384256-34384296)
[»] scaffold1562 (1 HSPs)
scaffold1562 (213-296)||(212-295)
[»] scaffold1158 (1 HSPs)
scaffold1158 (213-296)||(2298-2381)
[»] scaffold0952 (1 HSPs)
scaffold0952 (213-279)||(3596-3662)
[»] scaffold0636 (1 HSPs)
scaffold0636 (213-279)||(8480-8546)
[»] scaffold0028 (1 HSPs)
scaffold0028 (213-279)||(35381-35447)
[»] chr7 (24 HSPs)
chr7 (213-279)||(5967979-5968045)
chr7 (202-310)||(13858379-13858488)
chr7 (194-271)||(20513405-20513482)
chr7 (207-259)||(7181392-7181444)
chr7 (235-279)||(28437490-28437534)
chr7 (213-277)||(33113565-33113629)
chr7 (235-279)||(33406580-33406624)
chr7 (235-279)||(43188946-43188990)
chr7 (235-290)||(12884696-12884751)
chr7 (216-270)||(19679294-19679348)
chr7 (235-277)||(33810160-33810202)
chr7 (213-279)||(38235883-38235949)
chr7 (213-279)||(42620278-42620344)
chr7 (216-270)||(43751189-43751243)
chr7 (213-279)||(47275928-47275994)
chr7 (228-277)||(4787944-4787993)
chr7 (339-376)||(7181530-7181567)
chr7 (349-378)||(9153071-9153100)
chr7 (201-321)||(41500803-41500924)
chr7 (206-279)||(44720170-44720243)
chr7 (238-279)||(48049567-48049608)
chr7 (235-279)||(41002199-41002243)
chr7 (235-279)||(43665117-43665161)
chr7 (235-279)||(43778523-43778567)
[»] chr1 (37 HSPs)
chr1 (217-279)||(2925865-2925927)
chr1 (213-279)||(23871389-23871455)
chr1 (213-279)||(33991630-33991696)
chr1 (213-279)||(47905615-47905681)
chr1 (228-277)||(43530239-43530288)
chr1 (235-279)||(1523684-1523728)
chr1 (235-279)||(2175423-2175467)
chr1 (235-279)||(7964063-7964107)
chr1 (213-277)||(11017692-11017756)
chr1 (235-279)||(13061345-13061389)
chr1 (235-279)||(14153200-14153244)
chr1 (235-279)||(27500073-27500117)
chr1 (235-279)||(32299191-32299235)
chr1 (235-279)||(32300144-32300188)
chr1 (196-275)||(36269335-36269412)
chr1 (235-279)||(42162001-42162045)
chr1 (235-279)||(43571913-43571957)
chr1 (235-279)||(47206372-47206416)
chr1 (236-279)||(24436881-24436924)
chr1 (213-279)||(13255433-13255499)
chr1 (235-277)||(17688430-17688472)
chr1 (235-277)||(35619462-35619504)
chr1 (213-279)||(39889584-39889650)
chr1 (213-279)||(42488553-42488619)
chr1 (238-279)||(896446-896487)
chr1 (194-271)||(23079871-23079948)
chr1 (214-279)||(50402830-50402895)
chr1 (349-378)||(52331023-52331052)
chr1 (213-277)||(1688143-1688207)
chr1 (213-277)||(12293903-12293967)
chr1 (235-279)||(17675285-17675329)
chr1 (235-279)||(26757103-26757147)
chr1 (235-279)||(36325804-36325848)
chr1 (235-279)||(38795060-38795104)
chr1 (235-279)||(40243452-40243496)
chr1 (235-279)||(43036271-43036315)
chr1 (235-279)||(45565219-45565263)
[»] scaffold0717 (1 HSPs)
scaffold0717 (213-279)||(1667-1733)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 181 - 563
Target Start/End: Complemental strand, 32533367 - 32532985
Alignment:
Q  181 atcttcaaccttatttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32533367 atcttcaaccttatttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgaaagtattataacaacatagaa 32533268  T
Q  281 aagatttgaacaattttcaaagtcctccaaaatcctcctccgatacnnnnnnngagctatattagggagattttgtattatgaagaaaaataaactcttc 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  32533267 aagatttgaacaattttcaaagtcctccaaaatcctcctccgatactttttttgagctatattagggagattttgtattatgaagaaaaataaactcttc 32533168  T
Q  381 cattcctannnnnnnnnnnnnnnnnnnnnnnnncgaagctcccctcataaaccctcaaacagaccccaagatatctaactaacttcagttagttagttac 480  Q
    ||||||||                         |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32533167 cattcctatttctttttccttctttcctttttccgaagctcccctcataaaccctcaaacacaccccaagatatctaactaacttcagttagttagttac 32533068  T
Q  481 atggggggttatagtacgtttatggtgtagcaaaagctttcatgagttggaggaaacatgctcccttgataatttttgaattg 563  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32533067 atggggggttatagtacgtttatggtgtagcaaaagctttcatgagttggaggaaacatgctcccttgataatttttgaattg 32532985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 32533547 - 32533423
Alignment:
Q  1 tagagagataatttgagagagatgactattctcttttccgaatttattctttcttttctatcattattccattgcagttgagagtggcctatttatagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32533547 tagagagataatttgagagagatgactattctcttttccgaatttattctttcttttctatcattgttccattgcagttgagagtggcctatttatagat 32533448  T
Q  101 tcacctattgactaagggtctgttt 125  Q
    |||||||||||||||||||||||||    
T  32533447 tcacctattgactaagggtctgttt 32533423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 317
Target Start/End: Complemental strand, 32521827 - 32521721
Alignment:
Q  211 gaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaattt-tcaaagtcctcca 309  Q
    ||||| |||||||||||||||   |  | ||||||| |||||||||||| || ||||||||||| | ||||||||||||| ||||| |||||||| || |    
T  32521827 gaagataatgagaaaagaatgactaccaataatatatttttaattttgagag-attataacaacgtggaaaagatttgaagaatttatcaaagtcttcta 32521729  T
Q  310 aaatcctc 317  Q
    ||||||||    
T  32521728 aaatcctc 32521721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 3404500 - 3404566
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  3404500 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 3404566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 33230973 - 33231039
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  33230973 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 33231039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 36102816 - 36102882
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  36102816 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 36102882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 1942001 - 1942045
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  1942001 atgattaatatacttttaattttaagaatattataacaacataga 1942045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 13865040 - 13865084
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  13865040 atgattaatatacttttaattttaagaatattataacaacataga 13865084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 25033513 - 25033469
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  25033513 atgattaatatacttttaattttaagaatattataacaacataga 25033469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 29612124 - 29612080
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||    
T  29612124 atgattaatatatttttaattttaataatattataacaacataga 29612080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 34272648 - 34272604
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  34272648 atgattaatatacttttaattttaagaatattataacaacataga 34272604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 34349870 - 34349806
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||    
T  34349870 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacata 34349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 7079935 - 7079986
Alignment:
Q  228 aatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||| |||||||||||| |||||||||| | | |||||||||||||||||    
T  7079935 aatgcttatgattaatatatttttaattttaaaaatattataacaacataga 7079986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 33896585 - 33896515
Alignment:
Q  202 agtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataaca 272  Q
    |||| ||||| ||||||||| |||  ||| |  |||||||||||| |||||||||||| ||||||||||||    
T  33896585 agtgattttgtagagaatgataaattaatacaaatgattaatatatttttaattttgaaagtattataaca 33896515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 36906342 - 36906276
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||| ||||||||||    
T  36906342 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattatgacaacataga 36906276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 37659457 - 37659523
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||| ||||||||    
T  37659457 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataataacataga 37659523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 39194105 - 39194004
Alignment:
Q  194 tttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaa 293  Q
    ||||| |||||| ||||  ||||||||| |||  |||| | |||||| ||||| ||||||| || | | |||||||||||||||||| | ||||||| ||    
T  39194105 tttgaaagagtgtttttttagagaatgataaactaatgtttatgattcatatatttttaatattaagaatattataacaacatagaataaatttgaagaa 39194006  T
Q  294 tt 295  Q
    ||    
T  39194005 tt 39194004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 377
Target Start/End: Original strand, 2457943 - 2457971
Alignment:
Q  349 gattttgtattatgaagaaaaataaactc 377  Q
    |||||||||||||||||||||||||||||    
T  2457943 gattttgtattatgaagaaaaataaactc 2457971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 2474719 - 2474759
Alignment:
Q  239 ttaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||| | | |||||||||||||||||    
T  2474719 ttaatatacttttaattttaagaatattataacaacataga 2474759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 15108212 - 15108256
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||| ||||||| | | |||||||||||||||||    
T  15108212 atgattaatatacttataattttaagaatattataacaacataga 15108256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 31297296 - 31297340
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||| ||||||||    
T  31297296 atgattaatatacttttaattttaagaatattataataacataga 31297340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 34148527 - 34148571
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||| ||||||||    
T  34148527 atgattaatatacttttaattttaagaatattataaaaacataga 34148571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 279
Target Start/End: Original strand, 42157725 - 42157810
Alignment:
Q  194 tttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||| |||||| ||||| ||||||||| ||| ||||| | || ||| ||||| |||||||||||| |||||||||||||||||||    
T  42157725 tttgaaagagtgcttttgcagagaatgataaatgaatgtttatcattcatatatttttaattttgagagtattataacaacataga 42157810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 25428823 - 25428757
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||| ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  25428823 agagaatgataaaataatacttatgattaatatacttttaattttaagaatattataacaacataga 25428757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 42159804 - 42159904
Alignment:
Q  195 ttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaat 294  Q
    ||||||||||| ||||| |||||||||||| | |||||| || |||||||||  ||||||||||| |||||||||| | ||| ||||  ||||||| |||    
T  42159804 ttgagagagtg-ttttgtagagaatgagaagaaaatgcttataattaatatatctttaattttgagagtattataaaatcattgaaagaatttgaagaat 42159902  T
Q  295 tt 296  Q
    ||    
T  42159903 tt 42159904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 2420814 - 2420748
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  2420814 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 2420748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 23163678 - 23163612
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  23163678 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 23163612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 41961903 - 41961969
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  41961903 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 41961969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 43007448 - 43007514
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  43007448 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 43007514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 326
Target Start/End: Complemental strand, 44395852 - 44395712
Alignment:
Q  189 ccttatttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttg 288  Q
    |||||||| |||||||| ||||| | ||||||| || |||| ||| || ||||||||| || ||||||| | ||||||||||| | || |||| ||||||    
T  44395852 ccttatttaagagagtgattttgtaaagaatgataagagaacgcttataattaatatatttataatttttagagtattataactatatggaaatgatttg 44395753  T
Q  289 aacaat---tttcaaagtcctccaaaatcctcctccgatac 326  Q
    | ||||   |||  |||| ||||||||| ||| ||||||||    
T  44395752 agcaatatgttttgaagttctccaaaatgctcatccgatac 44395712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 46017360 - 46017294
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||| ||  || ||||||||||||||||||||||| | | |||||||||||||||||    
T  46017360 agagaatgataaaataaaacttatgattaatatacttttaattttaaaaatattataacaacataga 46017294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 49860991 - 49860925
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  49860991 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 49860925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 105085 - 105165
Alignment:
Q  199 gagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||| ||||||||| |||  ||| || |||||||||  | |||||| ||||| ||||||||| |||||||||    
T  105085 gagagtggttttgtagagaatgataaataaatacttatgattaatgcatttttaactttgaaagtattatagcaacataga 105165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 36796557 - 36796513
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  36796557 atgattaatatacttttaattttaagaatattataacaacataga 36796513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 38593107 - 38593043
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||| |||  ||| || ||||||||||| ||||||||||| | |||||||||||||||||    
T  38593107 agagaatgataaactaatacttatgattaatatgcttttaattttaaaagtattataacaacata 38593043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 39499331 - 39499287
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  39499331 atgattaatatacttttaattttaagaatattataacaacataga 39499287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 47714621 - 47714665
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  47714621 atgattaatatacttttaattttaagaatattataacaacataga 47714665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 47789394 - 47789438
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  47789394 atgattaatatacttttaattttaagaatattataacaacataga 47789438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 55439717 - 55439673
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  55439717 atgattaatatacttttaattttaagaatattataacaacataga 55439673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 30121448 - 30121514
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||| ||||||||||    
T  30121448 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattattacaacataga 30121514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 30131812 - 30131878
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | ||||||||||| |||||    
T  30131812 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaagataga 30131878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 38526286 - 38526244
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  38526286 atgattaatatacttttaattttaagaatattataacaacata 38526244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 43237445 - 43237379
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || |||||||||| |||||||||||| | | |||||||||||||||||    
T  43237445 agagaatgataaactaatacttatgattaataaacttttaattttaagaatattataacaacataga 43237379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 44412105 - 44412147
Alignment:
Q  237 gattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||| | | |||||||||||||||||    
T  44412105 gattaatatacttttaattttaaaaatattataacaacataga 44412147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 277
Target Start/End: Complemental strand, 44979558 - 44979488
Alignment:
Q  207 ttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||| ||||||||| |||  | |||| |||||||||  | |||||||||||| |||||||||||||||||    
T  44979558 ttttgtagagaatgataaattattgcttatgattaatgaatttttaattttgaaagtattataacaacata 44979488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 11040901 - 11040934
Alignment:
Q  344 agggagattttgtattatgaagaaaaataaactc 377  Q
    ||||||||||||||||||| ||||||||||||||    
T  11040901 agggagattttgtattatggagaaaaataaactc 11040934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 17642722 - 17642681
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacat 276  Q
    ||||||||||||||||||||||| | | ||||||||||||||    
T  17642722 atgattaatatacttttaattttaagaatattataacaacat 17642681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 19148307 - 19148258
Alignment:
Q  228 aatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    |||||| |||||||||||| |||||||||| | | |||||||||||||||    
T  19148307 aatgcttatgattaatatatttttaattttaagaatattataacaacata 19148258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 23613081 - 23613178
Alignment:
Q  199 gagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaattt 296  Q
    ||||||||||||| ||||||||| ||| ||||    || ||||| ||| ||| |||||||| |||||||||| ||||||||   |||||||| |||||    
T  23613081 gagagtggttttgtagagaatgataaacgaatcactataattaaaatattttaaattttgagagtattataataacatagattggatttgaataattt 23613178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 7435586 - 7435646
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaatt 295  Q
    ||||||| |||| |||||| ||| | | |||||||||||||||||||| ||||||| ||||    
T  7435586 atgattactatatttttaaatttaaaaatattataacaacatagaaaaaatttgaaaaatt 7435646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 7661191 - 7661127
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||| |||  ||| || |||||||| |||||||||||||| | | |||||||||||||||    
T  7661191 agagaatgataaactaatacttatgattaacatacttttaattttaagaatattataacaacata 7661127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 31178195 - 31178239
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | ||||||| |||||||||    
T  31178195 atgattaatatacttttaattttaagaatattatagcaacataga 31178239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 38515370 - 38515326
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||| ||||||||||    
T  38515370 atgattaatatacttttaattttaagaatattatgacaacataga 38515326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 46312368 - 46312412
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | ||||||| |||||||||    
T  46312368 atgattaatatacttttaattttaaaaatattatagcaacataga 46312412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 74606 - 74690
Alignment:
Q  193 atttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    |||||||| | || ||||| || |||||| ||| |||  |||||||||||||||||||||||||||  |||||||||||||||||    
T  74606 atttgagaaaatgtttttgtagtgaatgataaatgaacactcatgattaatatacttttaattttgcaagtattataacaacata 74690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 29880919 - 29880859
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaa 273  Q
    ||||||||| ||| ||||||| |||||||||||| |||||||||||||| |||||||||||    
T  29880919 agagaatgataaacgaatgcttatgattaatatatttttaattttgataatattataacaa 29880859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 18780517 - 18780473
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  18780517 atgattaatatacttttaattttaataatattataacaacataga 18780473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 279
Target Start/End: Complemental strand, 14196461 - 14196380
Alignment:
Q  194 tttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||| ||||  ||||||||| ||||||||| | |||||||||||| |||||||||    |||||||||||||||||||    
T  14196461 tttgagagagtgtttttacagagaatgataaaagaatg-ttatgattaatataattttaattt---gagtattataacaacataga 14196380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 4042119 - 4042053
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  4042119 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 4042053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 8410856 - 8410922
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  8410856 agagaatgataaattaatacttatgattaatatacttttaattttaagaatattataacaacataga 8410922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 13765865 - 13765931
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  13765865 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 13765931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 36567204 - 36567270
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  36567204 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 36567270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 38294043 - 38293977
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  38294043 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 38293977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 44020494 - 44020428
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  44020494 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 44020428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 3038895 - 3038939
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  3038895 atgattaatatacttttaattttaagaatattataacaacataga 3038939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 3119800 - 3119844
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  3119800 atgattaatatacttttaattttaagaatattataacaacataga 3119844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 8990911 - 8990955
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  8990911 atgattaatatacttttaattttaagaatattataacaacataga 8990955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 19383010 - 19382966
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  19383010 atgattaatatacttttaattttaagaatattataacaacataga 19382966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 296
Target Start/End: Complemental strand, 35812501 - 35812405
Alignment:
Q  200 agagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaattt 296  Q
    |||||| ||||| ||||||| | ||| |||||||||||||||||| | |||| |||||||   | ||||||||||| |||  ||||||||| |||||    
T  35812501 agagtgtttttgtagagaatcataaatgaatgctcatgattaataaagtttttattttgaggatgttataacaacaaagattagatttgaaaaattt 35812405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 38023373 - 38023436
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacat 276  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | ||||||||||||||    
T  38023373 agagaatgataaactaattcttatgattaatatacttttaattttaagaatattataacaacat 38023436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 38216438 - 38216509
Alignment:
Q  208 tttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||| ||||||||| | | ||||| | |||||||||||| |||||||||| | |||||||||| ||||||||    
T  38216438 tttgtagagaatgatagatgaatgtttatgattaatatatttttaatttttagagtattataaaaacataga 38216509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 14008255 - 14008321
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||| ||||| | | |||||||||||||||||    
T  14008255 agagaatgataaactaatacttatgattaatatacttttgattttaagaatattataacaacataga 14008321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 18826174 - 18826216
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  18826174 atgattaatatacttttaattttaagaatattataacaacata 18826216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 26434454 - 26434496
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacata 277  Q
    |||||||||||| |||||| ||||| |||||||||||||||||    
T  26434454 atgattaatatatttttaactttgaaagtattataacaacata 26434496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 40357612 - 40357546
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || |||||||||||| |||||||||| | | |||||||||||||||||    
T  40357612 agagaatgataaactaatacttatgattaatataattttaattttaagaatattataacaacataga 40357546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 9087406 - 9087455
Alignment:
Q  228 aatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    |||||| |||||||||||| |||||||||| ||| |||||| ||||||||    
T  9087406 aatgcttatgattaatatatttttaattttaataatattatgacaacata 9087455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 8555724 - 8555768
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | ||||||||||| |||||    
T  8555724 atgattaatatacttttaattttaagaatattataacaatataga 8555768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 10165546 - 10165502
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | ||||| |||||||||||    
T  10165546 atgattaatatacttttaattttaagaatattacaacaacataga 10165502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 12963919 - 12963963
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||| ||||||||    
T  12963919 atgattaatatacttttaattttaagaatattataaaaacataga 12963963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 13767551 - 13767507
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||| |||||||||| | | |||||||||||||||||    
T  13767551 atgattaatatatttttaattttaaaaatattataacaacataga 13767507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 31550210 - 31550254
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||| ||||||||||    
T  31550210 atgattaatatacttttaattttaagaatattatgacaacataga 31550254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 31899304 - 31899348
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | ||||||||||| |||||    
T  31899304 atgattaatatacttttaattttaagaatattataacaatataga 31899348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 32243630 - 32243570
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaa 273  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||    
T  32243630 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaa 32243570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 42644814 - 42644742
Alignment:
Q  199 gagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataac 271  Q
    ||||||||||||| ||||||||| |||  ||| || ||||| ||| || |||||| ||||| |||||||||||    
T  42644814 gagagtggttttgtagagaatgataaattaatacttatgatcaatgtatttttaactttgaaagtattataac 42644742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 44137268 - 44137224
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||| ||||||||    
T  44137268 atgattaatatacttttaattttaagaatattataagaacataga 44137224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 44656698 - 44656758
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaatt 295  Q
    |||||||||||| |||||||||| | | ||||||||||||||| |  | ||||||||||||    
T  44656698 atgattaatatatttttaattttaagaatattataacaacatatattaaatttgaacaatt 44656758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 23095054 - 23095120
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||| ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  23095054 agagaatgataaaataatacttatgattaatatacttttaattttaagaatattataacaacataga 23095120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 5825487 - 5825421
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  5825487 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 5825421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 24735035 - 24734969
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  24735035 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 24734969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 26574321 - 26574387
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  26574321 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 26574387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 14933570 - 14933619
Alignment:
Q  248 ttttaattttgatagtattataacaacatagaaaagatttgaacaatttt 297  Q
    |||||||||||||||||||||||||||||  ||| |||||||| ||||||    
T  14933570 ttttaattttgatagtattataacaacatgaaaaggatttgaagaatttt 14933619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 34914782 - 34914718
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||    
T  34914782 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacata 34914718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 1029425 - 1029382
Alignment:
Q  236 tgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||||||||||||| | | |||||||||||||||||    
T  1029425 tgattaatatacttttaattttaagaatattataacaacataga 1029382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 31345320 - 31345363
Alignment:
Q  236 tgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||||||||||||| | | |||||||||||||||||    
T  31345320 tgattaatatacttttaattttaagaatattataacaacataga 31345363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 26481057 - 26481123
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||| ||||    
T  26481057 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacgtaga 26481123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 29241759 - 29241825
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||| ||||||||    
T  29241759 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataagaacataga 29241825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 4909866 - 4909907
Alignment:
Q  238 attaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||||||||||| | | |||||||||||||||||    
T  4909866 attaatatacttttaattttaaaaatattataacaacataga 4909907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 22817269 - 22817330
Alignment:
Q  215 agaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacat 276  Q
    ||||||| ||| ||||||| |||||||||||| |||||||||| | | |||||||| |||||    
T  22817269 agaatgataaatgaatgcttatgattaatatatttttaattttaagaatattataataacat 22817330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 33939048 - 33939125
Alignment:
Q  212 aagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttga 289  Q
    |||||||||| |||  |||| | |||||||||||| |||||||||| | | ||||||||| |||||||| | ||||||    
T  33939048 aagagaatgataaattaatgtttatgattaatatatttttaattttaagaatattataactacatagaataaatttga 33939125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 32485916 - 32485994
Alignment:
Q  201 gagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||  |||||||| ||| |||||||| |||||| |||| |||||||||| | |||||||||||| ||||||    
T  32485916 gagtggttttgttgagaatgataaatgaatgctcgtgattagtatatttttaattttaagagtattataacatcataga 32485994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 52594552 - 52594634
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaatt 295  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||  ||||||||| ||||    
T  52594552 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacatagattagatttgaaaaatt 52594634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 279
Target Start/End: Original strand, 7182098 - 7182183
Alignment:
Q  194 tttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||| ||| |||||||  ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  7182098 tttgaaagaatggttttttagagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 7182183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 31530174 - 31530108
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  31530174 agagaatgataaattaatacttatgattaatatacttttaattttaagaatattataacaacataga 31530108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 32060801 - 32060735
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  32060801 agagaatgataaattaatacttatgattaatatacttttaattttaagaatattataacaacataga 32060735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 37756649 - 37756715
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  37756649 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 37756715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 38317154 - 38317220
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  38317154 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 38317220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 47669965 - 47669899
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  47669965 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 47669899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 49936657 - 49936591
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  |||||| |||||||||||| |||||||||| | | |||||||||||||||||    
T  49936657 agagaatgataaattaatgcttatgattaatatatttttaattttaagaatattataacaacataga 49936591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 42649979 - 42649911
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaatttt--gatagtattataacaacataga 279  Q
    ||||||||| ||| |||||||||||||||| ||| ||||||||||  || |||||||||||||| ||||    
T  42649979 agagaatgataaatgaatgctcatgattaacatatttttaattttgagagagtattataacaacttaga 42649911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 3126960 - 3127004
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  3126960 atgattaatatacttttaattttaagaatattataacaacataga 3127004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 13270086 - 13270042
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  13270086 atgattaatatacttttaattttaagaatattataacaacataga 13270042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 17873351 - 17873287
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||    
T  17873351 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacata 17873287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 41363760 - 41363804
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  41363760 atgattaatatacttttaattttaagaatattataacaacataga 41363804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 49404571 - 49404615
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  49404571 atgattaatatacttttaattttaagaatattataacaacataga 49404615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 290
Target Start/End: Complemental strand, 46176684 - 46176589
Alignment:
Q  195 ttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaa 290  Q
    |||||||| | |||||| ||||||||| |||  | | || ||||||||| || |||||| ||||| ||||||||||||| |||||  |||||||||    
T  46176684 ttgagagaatagttttgtagagaatgataaataagtacttatgattaatgtatttttaactttgaaagtattataacaatatagattagatttgaa 46176589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 48830740 - 48830803
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacat 276  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | ||||||||||||||    
T  48830740 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacat 48830803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 50088179 - 50088108
Alignment:
Q  188 accttatttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttga 259  Q
    |||||||||||||| ||  ||||| |||||| ||||| |||||| | |||||||||||| |||| |||||||    
T  50088179 accttatttgagagggtaattttgtagagaacgagaagagaatgtttatgattaatatatttttgattttga 50088108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 24291540 - 24291478
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaaca 275  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||    
T  24291540 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaaca 24291478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 32648930 - 32648996
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || |||||||||||| |||||||||| | | |||||||||||||||||    
T  32648930 agagaatgataaactaatacttatgattaatatatttttaattttaagaatattataacaacataga 32648996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 41844590 - 41844524
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | ||||||||||| |||||    
T  41844590 agagaatgataaattaatacttatgattaatatacttttaattttaagaatattataacaagataga 41844524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 27938858 - 27938891
Alignment:
Q  344 agggagattttgtattatgaagaaaaataaactc 377  Q
    ||||||||| ||||||||||||||||||||||||    
T  27938858 agggagattctgtattatgaagaaaaataaactc 27938891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 255868 - 255840
Alignment:
Q  349 gattttgtattatgaagaaaaataaactc 377  Q
    |||||||||||||||||||||||||||||    
T  255868 gattttgtattatgaagaaaaataaactc 255840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 27938696 - 27938768
Alignment:
Q  181 atcttcaaccttatttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaa 253  Q
    |||||| | ||||||| |||||||| ||||| |||| ||||  | |||||||| |||||||||||| ||||||    
T  27938696 atcttccaacttatttaagagagtgattttgtagaggatgattagagaatgcttatgattaatatatttttaa 27938768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 40423021 - 40423065
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||| |||||||||| | | |||||||||||||||||    
T  40423021 atgattaatatatttttaattttaagaatattataacaacataga 40423065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 46669887 - 46669935
Alignment:
Q  229 atgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||| |||||||||||| |||||||||| | | |||||||||||||||    
T  46669887 atgcttatgattaatatatttttaattttaagaatattataacaacata 46669935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 48620428 - 48620380
Alignment:
Q  229 atgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||| |||||||||||| |||||||||| | | |||||||||||||||    
T  48620428 atgcttatgattaatatatttttaattttaagaatattataacaacata 48620380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 326
Target Start/End: Original strand, 24171 - 24272
Alignment:
Q  226 agaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaat-tttcaaagtcctccaaaatcctcctccgat 324  Q
    |||||||| |||||||||||| ||||||| || | |||||||||||||||| |||| |||||||| ||| |||  ||| ||||  |||||||||||| ||    
T  24171 agaatgctaatgattaatatatttttaatctttagagtattataacaacatggaaaggatttgaagaatatttttaagccctctgaaatcctcctccaat 24270  T
Q  325 ac 326  Q
    ||    
T  24271 ac 24272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 5696476 - 5696572
Alignment:
Q  181 atcttcaaccttatttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||| | ||| ||||| | |||| ||||| ||||||||| |||  |||| | ||||||||||||  ||||||||||| |||||||||||||||||||    
T  5696476 atcttccatcttttttgaaatagtgattttgtagagaatgataaactaatgtttatgattaatata--tttaattttgaaagtattataacaacataga 5696572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 2021113 - 2021069
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  2021113 atgattaatatacttttaattttaagaatattataacaacataga 2021069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 6491339 - 6491275
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||| |||  |||||| |||||||||||| |||||||||| | | |||||||||||||||    
T  6491339 agagaatgataaattaatgcttatgattaatatatttttaattttaagaatattataacaacata 6491275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 10295616 - 10295572
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  10295616 atgattaatatacttttaattttaagaatattataacaacataga 10295572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 13839454 - 13839547
Alignment:
Q  181 atcttcaaccttatttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaa-ttttgatagtattataacaaca 275  Q
    |||||| | ||| ||||||| |||||||||| ||||||||| ||| ||||  | |||||||||||  |||||| |||||| |||||||||||||||    
T  13839454 atcttccatcttctttgagatagtggttttgtagagaatgataaatgaatatttatgattaatat--ttttaatttttgagagtattataacaaca 13839547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 17093030 - 17092986
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  17093030 atgattaatatacttttaattttaagaatattataacaacataga 17092986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 27480120 - 27480164
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  27480120 atgattaatatacttttaattttaagaatattataacaacataga 27480164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 31633008 - 31632909
Alignment:
Q  194 tttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaa 293  Q
    ||||| |||||  ||||| ||||||||| ||| |||||||  ||||||||||| ||||||||||||    ||||||||||||||||   |||||||| ||    
T  31633008 tttgaaagagtatttttgtagagaatgataaatgaatgcttctgattaatatatttttaattttga---cattataacaacatagattggatttgaagaa 31632912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 372
Target Start/End: Complemental strand, 12150594 - 12150563
Alignment:
Q  341 attagggagattttgtattatgaagaaaaata 372  Q
    ||||||||||||||||||||||||||||||||    
T  12150594 attagggagattttgtattatgaagaaaaata 12150563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 35704987 - 35705038
Alignment:
Q  228 aatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||| |||||||||||| |||||||||| | | |||||||||||||||||    
T  35704987 aatgcttatgattaatatatttttaattttaagaatattataacaacataga 35705038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 4648913 - 4648979
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | || ||||||||||||||    
T  4648913 agagaatgataaactaatacttatgattaatatacttttaattttaagaatactataacaacataga 4648979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 19389754 - 19389820
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  |||||| |||||||||||| |||||||||| | | ||||||||| |||||||    
T  19389754 agagaatgataaattaatgcttatgattaatatatttttaattttaaaaatattataactacataga 19389820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 25027077 - 25027011
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || || |||||||||||||||||||| | | |||||||||||||||||    
T  25027077 agagaatgataaactaatacttatcattaatatacttttaattttaagaatattataacaacataga 25027011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 375
Target Start/End: Original strand, 25626664 - 25626698
Alignment:
Q  341 attagggagattttgtattatgaagaaaaataaac 375  Q
    |||||||||||||||||| ||||||||||||||||    
T  25626664 attagggagattttgtatcatgaagaaaaataaac 25626698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 35701558 - 35701492
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || |||||||||||||||| |||||| | | |||||||||||||||||    
T  35701558 agagaatgataaactaatacttatgattaatatactttaaattttaagaatattataacaacataga 35701492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 38302284 - 38302350
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||| ||||||||    
T  38302284 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataataacataga 38302350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 41695132 - 41695066
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||| ||||| | | |||||||||||||||||    
T  41695132 agagaatgataaattaatacttatgattaatatacttttgattttaaaaatattataacaacataga 41695066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 1935048 - 1935097
Alignment:
Q  228 aatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    |||||| |||||||||||| |||||||||| | | |||||||||||||||    
T  1935048 aatgcttatgattaatatatttttaattttaagaatattataacaacata 1935097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 4841650 - 4841699
Alignment:
Q  228 aatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    |||||| |||||||||||| |||||||||| | | |||||||||||||||    
T  4841650 aatgcttatgattaatatatttttaattttaagaatattataacaacata 4841699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 26018881 - 26018832
Alignment:
Q  228 aatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    |||||| |||||||||||| |||||||||| | | |||||||||||||||    
T  26018881 aatgcttatgattaatatatttttaattttaagaatattataacaacata 26018832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 37508341 - 37508382
Alignment:
Q  238 attaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||||||||||| | | |||||||||||||||||    
T  37508341 attaatatacttttaattttaaaaatattataacaacataga 37508382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 26149736 - 26149692
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||| |||||||||||||||| | | |||||||||||||||||    
T  26149736 atgattgatatacttttaattttaagaatattataacaacataga 26149692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 34384256 - 34384296
Alignment:
Q  239 ttaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||| |||||||||| ||| |||||||||||||||||    
T  34384256 ttaatatatttttaattttaataatattataacaacataga 34384296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 295 - 212
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaattt 296  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||   |||||||| |||||    
T  295 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacatagattggatttgaaaaattt 212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 2298 - 2381
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaattt 296  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||   |||||||| |||||    
T  2298 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacatagattggatttgaaaaattt 2381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 3596 - 3662
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  3596 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 3662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 8546 - 8480
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  8546 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 8480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 35381 - 35447
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  35381 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 35447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 5967979 - 5968045
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  5967979 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 5968045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 310
Target Start/End: Complemental strand, 13858488 - 13858379
Alignment:
Q  202 agtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaattt-tcaa 300  Q
    |||| ||||| ||| ||||| ||| ||||||| |||||||||||  ||||||| |||| |||||||||||||| | ||  |||||| || ||||| || |    
T  13858488 agtgtttttgtagataatgataaatgaatgcttatgattaatatgtttttaatattgagagtattataacaacgtggattagatttaaaaaatttgtcca 13858389  T
Q  301 agtcctccaa 310  Q
    ||||||||||    
T  13858388 agtcctccaa 13858379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 20513482 - 20513405
Alignment:
Q  194 tttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataac 271  Q
    ||||||||| |||||||| ||||||||| |||  ||| || ||||||||| || |||||| ||||| |||||||||||    
T  20513482 tttgagagaatggttttgtagagaatgataaataaatacttatgattaatgtatttttaactttgaaagtattataac 20513405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 7181392 - 7181444
Alignment:
Q  207 ttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttga 259  Q
    ||||| ||||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  7181392 ttttgtagagaatgataaaagaatgcttatgattaatatatttttaatgttga 7181444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 28437490 - 28437534
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  28437490 atgattaatatacttttaattttaagaatattataacaacataga 28437534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 33113565 - 33113629
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||    
T  33113565 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacata 33113629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 33406580 - 33406624
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  33406580 atgattaatatacttttaattttaagaatattataacaacataga 33406624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 43188990 - 43188946
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  43188990 atgattaatatacttttaattttaagaatattataacaacataga 43188946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 12884696 - 12884751
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaa 290  Q
    |||||||||||| |||| ||||||| ||||||||||||| || |||| ||||||||    
T  12884696 atgattaatatattttttattttgagagtattataacaatatggaaaggatttgaa 12884751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 19679348 - 19679294
Alignment:
Q  216 gaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataa 270  Q
    |||||| |||||||| || ||||||||| ||||||||||||||  ||||||||||    
T  19679348 gaatgataaaagaatacttatgattaatgtacttttaattttgcgagtattataa 19679294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 33810160 - 33810202
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  33810160 atgattaatatacttttaattttaagaatattataacaacata 33810202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 38235949 - 38235883
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | ||||||||||| |||||    
T  38235949 agagaatgataaactaatacttatgattaatatacttttaattttaaaaatattataacaatataga 38235883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 42620278 - 42620344
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | ||||||||||| |||||    
T  42620278 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaatataga 42620344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 43751243 - 43751189
Alignment:
Q  216 gaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataa 270  Q
    |||||| ||||||||| | |||||||||||||||||| ||||| | |||||||||    
T  43751243 gaatgataaaagaatgtttatgattaatatacttttagttttgtttgtattataa 43751189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 47275928 - 47275994
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||| ||||||||    
T  47275928 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataataacataga 47275994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 4787944 - 4787993
Alignment:
Q  228 aatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    |||||| |||||||||||| |||||||||| | | |||||||||||||||    
T  4787944 aatgcttatgattaatatatttttaattttaaaaatattataacaacata 4787993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 7181530 - 7181567
Alignment:
Q  339 atattagggagattttgtattatgaagaaaaataaact 376  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  7181530 atattagggagattttgtattgtgaagagaaataaact 7181567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 9153100 - 9153071
Alignment:
Q  349 gattttgtattatgaagaaaaataaactct 378  Q
    ||||||||||||||||||||||||||||||    
T  9153100 gattttgtattatgaagaaaaataaactct 9153071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 41500924 - 41500803
Alignment:
Q  201 gagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacatagaaaagatttgaacaatttt-ca 299  Q
    ||||| ||||| ||||||| || ||  |||||  ||| |||||||| |||||||||| |  ||||||||| ||||| |||| || ||| | |||||| |     
T  41500924 gagtgtttttgtagagaattaggaagaaatgcatatggttaatatatttttaattttcagggtattataataacatggaaaggacttggagaatttttct 41500825  T
Q  300 aagtcctccaaaatcctcctcc 321  Q
    ||| ||||||||||||||||||    
T  41500824 aagccctccaaaatcctcctcc 41500803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 44720243 - 44720170
Alignment:
Q  206 gttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||| ||||||||| |||  ||| || ||||||| ||||||||||||||| | | ||||||||||| |||||    
T  44720243 gttttgtagagaatgataaactaatacttatgattagtatacttttaattttaagaatattataacaatataga 44720170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 48049567 - 48049608
Alignment:
Q  238 attaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||| || |||||||||||| |||||||||||||||||||    
T  48049567 attaatgtatttttaattttgaaagtattataacaacataga 48049608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 41002199 - 41002243
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||| |||||||||| | | |||||||||||||||||    
T  41002199 atgattaatatatttttaattttaagaatattataacaacataga 41002243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 43665117 - 43665161
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||| |||||||||| | | |||||||||||||||||    
T  43665117 atgattaatatatttttaattttaagaatattataacaacataga 43665161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 43778523 - 43778567
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | ||||||||||| |||||    
T  43778523 atgattaatatacttttaattttaagaatattataacaatataga 43778567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 2925865 - 2925927
Alignment:
Q  217 aatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||| |||| ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  2925865 aatgataaaataatacttatgattaatatacttttaattttaagaatattataacaacataga 2925927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 23871389 - 23871455
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  23871389 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 23871455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 33991696 - 33991630
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  33991696 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacataga 33991630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 47905615 - 47905681
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||||    
T  47905615 agagaatgataaactaatactaatgattaatatacttttaattttaagaatattataacaacataga 47905681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 43530239 - 43530288
Alignment:
Q  228 aatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    |||||| |||||||||||| |||||||||| | |||||||||||||||||    
T  43530239 aatgcttatgattaatatatttttaattttaagagtattataacaacata 43530288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 1523728 - 1523684
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  1523728 atgattaatatacttttaattttaagaatattataacaacataga 1523684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 2175467 - 2175423
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  2175467 atgattaatatacttttaattttaagaatattataacaacataga 2175423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 7964107 - 7964063
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  7964107 atgattaatatacttttaattttaagaatattataacaacataga 7964063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 11017756 - 11017692
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | |||||||||||||||    
T  11017756 agagaatgataaactaatacttatgattaatatacttttaattttaagaatattataacaacata 11017692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 13061345 - 13061389
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  13061345 atgattaatatacttttaattttaagaatattataacaacataga 13061389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 14153244 - 14153200
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  14153244 atgattaatatacttttaattttaagaatattataacaacataga 14153200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 27500117 - 27500073
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  27500117 atgattaatatacttttaattttaagaatattataacaacataga 27500073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 32299235 - 32299191
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  32299235 atgattaatatacttttaattttaagaatattataacaacataga 32299191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 32300188 - 32300144
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  32300188 atgattaatatacttttaattttaagaatattataacaacataga 32300144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 36269335 - 36269412
Alignment:
Q  196 tgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaaca 275  Q
    |||||||| | ||||| ||||||||| ||| ||||||| |||||||||||| ||||||| |||  ||| |||||||||||    
T  36269335 tgagagagggattttgtagagaatgaaaaatgaatgcttatgattaatatatttttaatgttg--agtgttataacaaca 36269412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 42162001 - 42162045
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  42162001 atgattaatatacttttaattttaaaaatattataacaacataga 42162045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 43571913 - 43571957
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  43571913 atgattaatatacttttaattttaagaatattataacaacataga 43571957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 47206372 - 47206416
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||||||||||||    
T  47206372 atgattaatatacttttaattttaagaatattataacaacataga 47206416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 24436881 - 24436924
Alignment:
Q  236 tgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||| |||||||||| | |||||||||||||||||||    
T  24436881 tgattaatatatttttaattttaaaagtattataacaacataga 24436924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 13255499 - 13255433
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||| ||||| | | |||||||||||||||||    
T  13255499 agagaatgataaactaatacttatgattaatatacttttgattttaagaatattataacaacataga 13255433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 17688472 - 17688430
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  17688472 atgattaatatacttttaattttaagaatattataacaacata 17688430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 35619462 - 35619504
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  35619462 atgattaatatacttttaattttaagaatattataacaacata 35619504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 39889584 - 39889650
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || |||||||||||||||||||||||   | |||||||||||||||||    
T  39889584 agagaatgataaactaatacttatgattaatatacttttaattttatgaatattataacaacataga 39889650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 42488553 - 42488619
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || ||||||||||||||||| ||||| | | |||||||||||||||||    
T  42488553 agagaatgataaactaatacttatgattaatatacttttgattttaagaatattataacaacataga 42488619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 896446 - 896487
Alignment:
Q  238 attaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||||||||||| | | |||||||||||||||||    
T  896446 attaatatacttttaattttaagaatattataacaacataga 896487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 23079948 - 23079871
Alignment:
Q  194 tttgagagagtggttttgaagagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataac 271  Q
    |||||||||||| ||||  ||||||||| |||  ||| || ||||||||| || |||||| ||||| |||||||||||    
T  23079948 tttgagagagtgattttatagagaatgataaataaatacttatgattaatgtatttttaactttgaaagtattataac 23079871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 50402895 - 50402830
Alignment:
Q  214 gagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||| |||  ||| || |||||||||||| |||||||||| | | |||||||||||||||||    
T  50402895 gagaatgataaactaatacttatgattaatatatttttaattttaaaaatattataacaacataga 50402830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 52331052 - 52331023
Alignment:
Q  349 gattttgtattatgaagaaaaataaactct 378  Q
    ||||||||||||||||||||||||||||||    
T  52331052 gattttgtattatgaagaaaaataaactct 52331023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 1688143 - 1688207
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||| |||  ||| || ||||||||||||||||||||||| | | ||||||| |||||||    
T  1688143 agagaatgataaactaatacttatgattaatatacttttaattttaaaaatattatagcaacata 1688207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 12293967 - 12293903
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacata 277  Q
    ||||||||| |||  ||| || || |||||||||||||||||||| | | |||||||||||||||    
T  12293967 agagaatgataaactaatacttattattaatatacttttaattttaagaatattataacaacata 12293903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 17675329 - 17675285
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | ||||||||| |||||||    
T  17675329 atgattaatatacttttaattttaagaatattataaccacataga 17675285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 26757103 - 26757147
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | |||||||| ||||||||    
T  26757103 atgattaatatacttttaattttaagaatattataagaacataga 26757147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 36325848 - 36325804
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||    
T  36325848 atgattaatataattttaattttaataatattttaacaacataga 36325804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 38795104 - 38795060
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||| ||||||||||||||||| | | |||||||||||||||||    
T  38795104 atgatgaatatacttttaattttaagaatattataacaacataga 38795060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 40243496 - 40243452
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||| |||||||||| | | |||||||||||||||||    
T  40243496 atgattaatatatttttaattttaagaatattataacaacataga 40243452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 43036271 - 43036315
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    |||||||||||| |||||||||| | | |||||||||||||||||    
T  43036271 atgattaatatatttttaattttaagaatattataacaacataga 43036315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 45565263 - 45565219
Alignment:
Q  235 atgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||||||||||||||||| | | || ||||||||||||||    
T  45565263 atgattaatatacttttaattttaaaaatactataacaacataga 45565219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 1733 - 1667
Alignment:
Q  213 agagaatgagaaaagaatgctcatgattaatatacttttaattttgatagtattataacaacataga 279  Q
    ||||||||| |||  ||| || |||||||||||| |||||||||| | | |||||||||||||||||    
T  1733 agagaatgataaactaatacttatgattaatatatttttaattttaagaatattataacaacataga 1667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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