View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_31 (Length: 262)
Name: NF17093_low_31
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_31 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 262
Target Start/End: Complemental strand, 2410266 - 2410014
Alignment:
| Q |
10 |
agagagaaaacaccaaaggagaaaagctaaacctccattaaa-ggatacacttcaagcacattgacaatatttattaattaaggaaaaaattaagaagta |
108 |
Q |
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| T |
2410266 |
agagagaaaacaccaaaggagaaaagctaaacctccattaaaaggatacacttcaagcacattgacaatatttattaattaaggaaaaaattaacaagta |
2410167 |
T |
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| Q |
109 |
tatctgatatactagttaagaaatcaaatataataaagatattttagaatttgtgtagtcaaacttttagatgtatacaaaattgttcttttcaatacaa |
208 |
Q |
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| T |
2410166 |
tctctgatatattagttaagaaatccgatataataaagatattttagaatttgtgtagtcaaacttttagatgtatacaaaa-tgttcttttcaatacaa |
2410068 |
T |
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| Q |
209 |
aatttacttttattgttagctgaactagtgtcccagagacgttagttagcatga |
262 |
Q |
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| T |
2410067 |
aatttacttttattgttagcttaactagtgtctcagagacgttagttagcatga |
2410014 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 18495165 - 18495111
Alignment:
| Q |
119 |
actagttaagaaatcaaatataataaagatattttagaatttgtgtagtcaaact |
173 |
Q |
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| T |
18495165 |
actagttaagatagcaaatatagtaaaaatatcttagaatttgtgtagtcaaact |
18495111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 41996701 - 41996654
Alignment:
| Q |
130 |
aatcaaatataataaagatattttagaatttgtgtagtcaaactttta |
177 |
Q |
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| T |
41996701 |
aatcaaatataataaaaatattttagaacttgtatagtcaacctttta |
41996654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 33648638 - 33648590
Alignment:
| Q |
124 |
ttaagaaatcaaatataataaagatattttagaatttgtgtagtcaaac |
172 |
Q |
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| T |
33648638 |
ttaagaaaacaaatataataaaaatattttagagcttgtgtagtcaaac |
33648590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 8206559 - 8206505
Alignment:
| Q |
117 |
atactagttaagaaatcaaatataataaagatattttagaatttgtgtagtcaaa |
171 |
Q |
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| T |
8206559 |
atactagttaagcaaacaaatataataaaaatatcttagaaattgtgcagtcaaa |
8206505 |
T |
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