View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_32 (Length: 260)
Name: NF17093_low_32
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2409660 - 2409421
Alignment:
| Q |
1 |
catgaaatcctttgccatatgtgggcacaaacttcattcgatatagttatcttcacccgnnnnnnnnnncattgtcaacagtgttagattcatttgtctt |
100 |
Q |
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| T |
2409660 |
catgaaatcctttgccat--gtgggcacaaacttcattcgatatagttatcttcacccgttttttt---cattgtcaacagtgttagattcatttgtctt |
2409566 |
T |
|
| Q |
101 |
ttatcaacgacaacaagcatttgtcttttttcttactattgccaagttgtccgtgaatttaaatttaaactaacatggtcaccgaaagtaataatctnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2409565 |
ttatcaacgacaacaagcatttgtcttttttcttactattgccaagttgtccgtgaatttaaatttaaactaacatggtcaccgaaagtaataatctaaa |
2409466 |
T |
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| Q |
201 |
nnnngttaacaaacttatgtgggataaattagttgaggtgtaatc |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
2409465 |
aaaagttaacaaacttatgtgggataaattagttgaggtgtaatc |
2409421 |
T |
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