View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_39 (Length: 235)
Name: NF17093_low_39
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_39 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 33492791 - 33492611
Alignment:
| Q |
19 |
gttatatctcataaattgtcatgcttgatcatagttttaaatcacggttgcggtcacttataaagttgggtgtcgcagttgcgtttatgatggttgcaat |
118 |
Q |
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| T |
33492791 |
gttatatctcataaattgccatgcttcatcatggttttaaatcgcggttgcggtcatctataaagttgggtgtagcagttgcgtttatgatggttgcaat |
33492692 |
T |
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| Q |
119 |
taccgttgttgcgccgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttatc |
200 |
Q |
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| T |
33492691 |
taccgttgttgcgccgtgaaataattttaaattttca-caaactatataaagcgaaaccacgatgttactacacaatttatc |
33492611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 3975444 - 3975369
Alignment:
| Q |
124 |
ttgttgcgccgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttatc |
200 |
Q |
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| T |
3975444 |
ttgttgcagcgtgaaatgattttaaattttcac-aaactatataaagtgacaccaccatactactacactatttatc |
3975369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 32520202 - 32520126
Alignment:
| Q |
123 |
gttgttgcgccgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttatc |
200 |
Q |
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| T |
32520202 |
gttgttgcggcgtgaaataattttaaattttcac-aaactatataaagtgacaccaccatgctattacactatttatc |
32520126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 6348 - 6283
Alignment:
| Q |
133 |
cgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttat |
199 |
Q |
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| T |
6348 |
cgtgaaataattttaaattttcaa-aaactatataaagcgacaccagcatgctactacacaatttat |
6283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 7893 - 7828
Alignment:
| Q |
133 |
cgtgaaataattttaaattatcaccaaactatataaagcgaaaccacgatgctactacactatttat |
199 |
Q |
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| T |
7893 |
cgtgaaataattttaaattttcaa-aaactatataaagcgacaccagcatgctactacacaatttat |
7828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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