View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_41 (Length: 227)
Name: NF17093_low_41
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_41 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 26398754 - 26398975
Alignment:
| Q |
6 |
accatactctatttcatcaataattgatgttgaaaaaatcatggtttagttatgtttgaaccgatgtttttaaaatcgacctgtcattaaactcgaaagt |
105 |
Q |
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| T |
26398754 |
accatactctatttcatcaataattgatgtcgaaaaaatcatggtttagttatgtttgaaccgatgtttttaaaattgacctgtcatcaaactcgaaagt |
26398853 |
T |
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| Q |
106 |
agtactgatacaaggtttaatggtctaactgtggttagattggtaataataagataacatttttcacgatatattaagtaaggaagcttcgtatatcatt |
205 |
Q |
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| T |
26398854 |
agtattgatacaaggtttaatggtctaactgtggttagattggtaataataagataacatttttcacgatatattaagtaaggaagcttcatatatcatt |
26398953 |
T |
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| Q |
206 |
ttcaaaaactcaaaagtattct |
227 |
Q |
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| T |
26398954 |
ttcaaaaactaaaaaggattct |
26398975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 26085935 - 26085755
Alignment:
| Q |
41 |
aaatcatggtttagttatgtttgaaccgatgtttttaaaatcgacctgtcattaaactcgaaagtagtactgatacaaggtttaatggtctaactgtggt |
140 |
Q |
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|||||||||| |||||| ||||||| |||||||||||| | ||| |||||| ||| |||| ||| ||||| ||||||||||| ||| ||||||||| |
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| T |
26085935 |
aaatcatggtcgggttatgattgaaccaatgtttttaaaaacaaccagtcattgtactagaaaa-agtgctgattcaaggtttaatcgtcgaactgtggt |
26085837 |
T |
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| Q |
141 |
t----agattggtaataataagataacatttttcacgatatattaagtaaggaagcttcgtatatcattttcaaaaactcaa |
218 |
Q |
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| T |
26085836 |
tggttagattggtaataatacgataacatttttcatgatatattaaataatgaagctttatatatcattttaaaaaactcaa |
26085755 |
T |
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