View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_45 (Length: 208)
Name: NF17093_low_45
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 19701953 - 19702131
Alignment:
| Q |
12 |
gagatgaaaatatttgttgataagtggagatacaagcaagcgttcatggagacacataaaaagctcaaagtggccaggttaaggaaaaagaatgtcagaa |
111 |
Q |
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| T |
19701953 |
gagatgaaaatatttgttgataagtggagatacaagcaagcgttcatggagacacataaaaagctcaaagtggccaggttaaggaaaaagaatgtcagaa |
19702052 |
T |
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| Q |
112 |
aaatggaagcgcttattgcttttaagaattgagctggcttaaatgcatgaactgtatccacagctgagtgacctcttat |
190 |
Q |
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| T |
19702053 |
aaatggaagcgcttattgcttttaagaattgggctggcttaaatgcatgaactgtatccacagctgagtgacctcttat |
19702131 |
T |
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Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 20014662 - 20014484
Alignment:
| Q |
12 |
gagatgaaaatatttgttgataagtggagatacaagcaagcgttcatggagacacataaaaagctcaaagtggccaggttaaggaaaaagaatgtcagaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20014662 |
gagatgaaaatatttgttgataagtggagatacaagcaagcgttcatggagacacataaaaagctcaaagtggccaggttaaggaaaaagaatgtcagaa |
20014563 |
T |
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| Q |
112 |
aaatggaagcgcttattgcttttaagaattgagctggcttaaatgcatgaactgtatccacagctgagtgacctcttat |
190 |
Q |
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| T |
20014562 |
aaatggaagctcttattgctttcaagaattgggctggcttaaatgcgtgaactgtatgcactggtgagggacctcttat |
20014484 |
T |
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