View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17093_low_5 (Length: 554)
Name: NF17093_low_5
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 36947265 - 36947600
Alignment:
| Q |
20 |
ggctgtttattggattcccccacttttggcgcccatgtacccaaaggtattgaaccaattggtagttgaagaaccggcaaagagccataatcgttcttga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36947265 |
ggctgtttattggattcccccacttttggcgcccatgtacccaaaggtatcgaaccaattggtagttgaagaaccggcaaagagccataatcgttcttga |
36947364 |
T |
|
| Q |
120 |
aatgcttgcatatacctgaaaattaactccatacattagttccaaaccatttatgcgcattgccaataaatgtgaaagcttacattttattatttctgag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36947365 |
aatgcttgcatatacctgaaaattaactccgtacattagttccaaaccatttatgcgcattgccaataaatgtgaaagcttacattttattatttctgag |
36947464 |
T |
|
| Q |
220 |
cgagaagtcatatgtagcagctgaggagttgacccgccctcggaagaagaatgcataatagcaactactgccacctcgtattgcaaaaattttaaagcga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
36947465 |
ggagaagtcatatgtagcagctgaggagttgacccgccctcggaagaagaatgcataatagcaactactgccaccttgtattgcaaaaattttaaaacga |
36947564 |
T |
|
| Q |
320 |
tgtcttctagtctctcagagggcctagcctgcagat |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
36947565 |
tgtcttctagtctctcagagggcctagcctgcagat |
36947600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 409 - 554
Target Start/End: Original strand, 36947654 - 36947799
Alignment:
| Q |
409 |
tttctacgcgaaattgggaaattgatttgatacgcaaaaaatttcgcacaagtgttaaagagcttacatcaacaaaactcgaaggatatgttttcccatt |
508 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36947654 |
tttctacgcaaaattgggaaattgatttgatgagcaaaaaatttctaacaagtgttgaggagcttacatcaacaaaactccaaggatatgttttcccatt |
36947753 |
T |
|
| Q |
509 |
actatcagttccacattgctgtaattttctctctatgcatgctgct |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36947754 |
actatcagttccacattgctgtaattttctctctatgcatgctgct |
36947799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University