View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17093_low_6 (Length: 552)

Name: NF17093_low_6
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17093_low_6
NF17093_low_6
[»] chr1 (3 HSPs)
chr1 (15-542)||(39100211-39100730)
chr1 (124-260)||(35772179-35772313)
chr1 (184-289)||(25145578-25145683)
[»] chr6 (2 HSPs)
chr6 (197-289)||(6400726-6400818)
chr6 (147-260)||(17147717-17147829)
[»] chr2 (2 HSPs)
chr2 (198-289)||(15124655-15124746)
chr2 (180-269)||(40149092-40149179)
[»] chr4 (1 HSPs)
chr4 (198-288)||(27634188-27634278)
[»] chr3 (2 HSPs)
chr3 (198-292)||(19954325-19954418)
chr3 (198-260)||(35038301-35038363)
[»] chr8 (4 HSPs)
chr8 (198-260)||(18004203-18004263)
chr8 (198-288)||(8084249-8084339)
chr8 (184-289)||(3157417-3157522)
chr8 (180-260)||(39960107-39960186)
[»] chr7 (3 HSPs)
chr7 (198-260)||(29469755-29469817)
chr7 (199-260)||(21861444-21861505)
chr7 (197-269)||(36277097-36277169)
[»] chr5 (3 HSPs)
chr5 (197-255)||(15590093-15590151)
chr5 (198-292)||(32908825-32908918)
chr5 (184-260)||(11896008-11896084)


Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 542
Target Start/End: Complemental strand, 39100730 - 39100211
Alignment:
Q  15 accattcactatgtcaatgctcaaaacgatatcagcactatcatttcttaatttaattgacggcttaatatagtaatggctttgattaatgttgattatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39100730 accattcactatgtcaatgctcaaaacgatatcagcactatcatttcttaatttaattgacggcttaatatagtaatggctttgattaatgttcattatc 39100631  T
Q  115 ttataacataaaaccggcattctaaggtaagaattgcccccacttatataaatatattatcag-ttatctcctatccaatattagactcttaacaccccc 213  Q
    |||||||||||||             ||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||| ||||||||||||||||    
T  39100630 ttataacataaaaa------------gtaagaattgctcccacttatataaatatattgtcaggttatctcctatcaaatattggactcttaacaccccc 39100543  T
Q  214 tcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctgatagcagatgatctaattgatattaaagata 313  Q
    ||| || |||||| ||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| | ||| |||||| ||||||    
T  39100542 tctcacgaccagttctattgggtttgattcgtggacataaatagtgggtgacccgataataaaaacctgatagcagatgacccaatggatattgaagata 39100443  T
Q  314 ccattttagaaatgatggtcagacctaacaaaatcccacaaaaccaactttttgagataagaattacctccacttatacatacacattgtcatgccatct 413  Q
    |||||||||||||| ||||| |||||||||||||||||||||||| | |||||||  |||| ||||||||||||| |||||||||||||||||| |||||    
T  39100442 ccattttagaaatggtggtcggacctaacaaaatcccacaaaaccgattttttgaagtaaggattacctccacttgtacatacacattgtcatgtcatct 39100343  T
Q  414 tctatccaat---ggactttcaagatattatgcatccatttaaattaaattaaattaaattgcctcgtattctccagaatttatccactatgtggtttta 510  Q
    | ||||| ||    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39100342 tatatccgattcgagactttcaagacattatgcatccatttaaattaaattaaattaaattgcctcgtattctccagaatttatccactatgtggtttta 39100243  T
Q  511 tcattccaatgcctctctgcaaaagctctgtg 542  Q
    ||||||||||||||||||||||||||||||||    
T  39100242 tcattccaatgcctctctgcaaaagctctgtg 39100211  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 35772313 - 35772179
Alignment:
Q  124 aaaaccggcattctaaggtaagaattgcccccacttatataaatatattatcagtt-atctcctatccaatattagactcttaacaccccctcttacaac 222  Q
    ||||||||| |||| ||||||| ||||||||||||||||  || | ||| ||||   ||||||||||| || |  |||||||||||| ||| || |||||    
T  35772313 aaaaccggc-ttctgaggtaaggattgcccccacttata--aacacattgtcaggccatctcctatccgatgtgggactcttaacacacccgctcacaac 35772217  T
Q  223 cagtactattaggtttgattcgtggacataaatagtgg 260  Q
    | | |||||| || ||| ||||||||||||||| ||||    
T  35772216 cggcactattgggcttggttcgtggacataaatggtgg 35772179  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 25145578 - 25145683
Alignment:
Q  184 cctatccaatattagactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctga 283  Q
    ||||||| || | ||||||||||||| ||| || || ||||| ||||||  | ||||||||||||||| ||| |||| || ||||| ||   ||||||||    
T  25145578 cctatccgatgtgagactcttaacacaccccctcacgaccagcactattgagcttgattcgtggacattaatggtgggtggtccgataacggaaacctga 25145677  T
Q  284 tagcag 289  Q
    ||||||    
T  25145678 tagcag 25145683  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 6400726 - 6400818
Alignment:
Q  197 agactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctgatagcag 289  Q
    ||||||||||||||||| || || ||||| |||||| || ||| ||||||||||||||| |||| || ||||| |  | ||||||||||||||    
T  6400726 agactcttaacaccccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatagcagaaacctgatagcag 6400818  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 17147717 - 17147829
Alignment:
Q  147 attgcccccacttatataaatatattatcagtt-atctcctatccaatattagactcttaacaccccctcttacaaccagtactattaggtttgattcgt 245  Q
    ||||||||||||||||  |||| ||| |||| | || |||||||| || |  |||||||||||| ||| || |||||||| |||||| || ||| |||||    
T  17147717 attgcccccacttata--aatacattgtcaggtcatgtcctatccgatgtgggactcttaacacaccccctcacaaccagcactattgggcttggttcgt 17147814  T
Q  246 ggacataaatagtgg 260  Q
    |||||||||| ||||    
T  17147815 ggacataaatggtgg 17147829  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 15124655 - 15124746
Alignment:
Q  198 gactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctgatagcag 289  Q
    ||||||||||||  || || |||||||| |||||| |  ||| ||||||||||||||| |||||||| |||| ||  |||||||||||||||    
T  15124655 gactcttaacacatcccctcacaaccagcactattggacttggttcgtggacataaatggtggatgacccgataacgaaaacctgatagcag 15124746  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 40149092 - 40149179
Alignment:
Q  180 atctcctatccaatattagactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccga 269  Q
    |||| |||||| || | ||||||||||||| |||||  || ||||| |||||| || ||| |||||||||||||||||||| || |||||    
T  40149092 atcttctatccgatgtgagactcttaacacaccctc--acgaccagcactattgggcttggttcgtggacataaatagtgggtggtccga 40149179  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 27634188 - 27634278
Alignment:
Q  198 gactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctgatagca 288  Q
    |||||||||||||||| || || ||||| |||||| || ||| |||||||||||||| ||||| || ||||| |  | |||||||||||||    
T  27634188 gactcttaacaccccccctcacgaccagcactattgggcttggttcgtggacataaacagtgggtggtccgatagcagaaacctgatagca 27634278  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 19954325 - 19954418
Alignment:
Q  198 gactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctgatagcagatg 292  Q
    |||||||||||||||| || || |||||||||||| || ||| ||||||||||||||| |||| || || || |   ||||||||||||||||||    
T  19954325 gactcttaacaccccc-ctcacgaccagtactattgggcttggttcgtggacataaatggtgggtggtcagatagcgaaaacctgatagcagatg 19954418  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 35038301 - 35038363
Alignment:
Q  198 gactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtgg 260  Q
    |||||||||||| ||| || || |||||||||||| || ||| ||||||||||||||| ||||    
T  35038301 gactcttaacacaccccctcacgaccagtactattgggcttggttcgtggacataaatggtgg 35038363  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 18004203 - 18004263
Alignment:
Q  198 gactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtgg 260  Q
    ||||||||||||||||||  || ||||| ||||||||| ||| ||||||||||||||| ||||    
T  18004203 gactcttaacaccccctc--acgaccagcactattaggcttggttcgtggacataaatggtgg 18004263  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 8084339 - 8084249
Alignment:
Q  198 gactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctgatagca 288  Q
    |||||||||||| ||| || || ||||| |||||| || ||| ||||||||||||||| |||| |||||| | |   ||||||||||||||    
T  8084339 gactcttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtgatccaatagcgaaaacctgatagca 8084249  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 3157417 - 3157522
Alignment:
Q  184 cctatccaatattagactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctga 283  Q
    ||||||| || | ||||||||||||| ||| || || ||||| |||||| || ||| ||||||||||||||| |||| ||  |||| |   |||||||||    
T  3157417 cctatcccatgtgagactcttaacacacccactcacgaccagcactattgggcttggttcgtggacataaatggtgggtgtcccgatagcgaaaacctga 3157516  T
Q  284 tagcag 289  Q
    ||||||    
T  3157517 tagcag 3157522  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 39960186 - 39960107
Alignment:
Q  180 atctcctatccaatattagactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtgg 260  Q
    ||||||||||| || |  |||||||||||||||| || || ||||| |||||| || ||| ||||||||||||||| ||||    
T  39960186 atctcctatccgatgtgggactcttaacaccccc-ctcacgaccagcactattgggcttggttcgtggacataaatggtgg 39960107  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 29469817 - 29469755
Alignment:
Q  198 gactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtgg 260  Q
    |||||||||||| ||| || || ||||| |||||| || ||||||||||||||||||| ||||    
T  29469817 gactcttaacacaccccctcacgaccagcactattgggcttgattcgtggacataaatggtgg 29469755  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 21861505 - 21861444
Alignment:
Q  199 actcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtgg 260  Q
    ||||||||||| ||| || || ||||| ||||||||| ||| ||||||||||||||| ||||    
T  21861505 actcttaacacaccccctcacgaccagcactattaggcttggttcgtggacataaatggtgg 21861444  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 36277097 - 36277169
Alignment:
Q  197 agactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccga 269  Q
    ||||||||||||| ||| || || ||||| |||||| || ||| ||||||||||||||| |||| || |||||    
T  36277097 agactcttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccga 36277169  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 15590151 - 15590093
Alignment:
Q  197 agactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaat 255  Q
    ||||||||||||| ||| || || ||||| |||||| |||||| |||||||||||||||    
T  15590151 agactcttaacacaccccctcacgaccagcactattgggtttggttcgtggacataaat 15590093  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 32908825 - 32908918
Alignment:
Q  198 gactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctgatagcagatg 292  Q
    |||||||||||| ||| || || ||||| |||||| |||||| ||||| ||||||||| |||| ||| |||| |  | |||||||||||||||||    
T  32908825 gactcttaacacaccc-ctcacgaccagcactattgggtttggttcgttgacataaatggtgggtgacccgatagcagaaacctgatagcagatg 32908918  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 11896008 - 11896084
Alignment:
Q  184 cctatccaatattagactcttaacaccccctcttacaaccagtactattaggtttgattcgtggacataaatagtgg 260  Q
    |||||||||| | ||||||||||||| ||| || || ||||  |||||| |||||| |||| |||||||||| ||||    
T  11896008 cctatccaatgtaagactcttaacacaccccctcacgaccatcactattgggtttggttcgcggacataaatggtgg 11896084  T

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