View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17093_low_7 (Length: 544)

Name: NF17093_low_7
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17093_low_7
NF17093_low_7
[»] chr8 (2 HSPs)
chr8 (17-534)||(11487050-11487567)
chr8 (420-533)||(44955191-44955304)
[»] chr3 (43 HSPs)
chr3 (134-526)||(10361340-10361732)
chr3 (309-526)||(9841171-9841388)
chr3 (133-530)||(13852996-13853393)
chr3 (312-526)||(10129241-10129455)
chr3 (254-531)||(10502840-10503117)
chr3 (309-538)||(11779509-11779738)
chr3 (309-526)||(10519798-10520015)
chr3 (309-534)||(10665779-10666004)
chr3 (21-473)||(10431633-10432094)
chr3 (309-526)||(10263014-10263231)
chr3 (348-533)||(10373374-10373559)
chr3 (309-525)||(11771547-11771763)
chr3 (288-471)||(10530953-10531136)
chr3 (353-525)||(10091151-10091323)
chr3 (353-525)||(10198033-10198205)
chr3 (309-471)||(10582924-10583086)
chr3 (159-526)||(9851902-9852269)
chr3 (324-471)||(10679788-10679935)
chr3 (348-474)||(10034355-10034481)
chr3 (17-115)||(11779938-11780036)
chr3 (17-115)||(10034015-10034113)
chr3 (488-534)||(10085753-10085799)
chr3 (488-534)||(10192673-10192719)
chr3 (17-115)||(10519500-10519598)
chr3 (263-393)||(11146523-11146653)
chr3 (31-115)||(9840887-9840971)
chr3 (18-113)||(10079426-10079521)
chr3 (17-115)||(10128940-10129038)
chr3 (17-115)||(10373801-10373899)
chr3 (17-115)||(10582625-10582723)
chr3 (279-393)||(11244195-11244309)
chr3 (17-115)||(11771249-11771347)
chr3 (18-113)||(10186396-10186491)
chr3 (279-393)||(11157689-11157803)
chr3 (280-393)||(11128698-11128811)
chr3 (280-473)||(13163264-13163457)
chr3 (31-115)||(9851768-9851852)
chr3 (17-104)||(10530662-10530749)
chr3 (19-113)||(10502600-10502694)
chr3 (280-393)||(8863573-8863686)
chr3 (17-86)||(10090806-10090875)
chr3 (17-86)||(10197688-10197757)
chr3 (17-86)||(10262713-10262782)
[»] scaffold0083 (2 HSPs)
scaffold0083 (312-474)||(55193-55355)
scaffold0083 (17-115)||(55558-55656)
[»] chr4 (1 HSPs)
chr4 (254-478)||(17850513-17850737)
[»] chr2 (2 HSPs)
chr2 (353-533)||(26909245-26909425)
chr2 (20-112)||(26908906-26908998)
[»] scaffold0002 (2 HSPs)
scaffold0002 (280-473)||(143531-143724)
scaffold0002 (280-473)||(151836-152029)


Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 11487050 - 11487567
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaatn 116  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11487050 acatttgcctagccaccttccttgcatagaaaaaattaatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaata 11487149  T
Q  117 nnnnnnnttgatatcaatgatggaaggaccgaactgtctttacttgggagtgactctccgtgtatgaggcagcatatagcgattgaaaagtgtgtcacgt 216  Q
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11487150 aaaaaaattgatatcaatgatggaatgaccgaactgtctttacttgggagtgactctccgtgtatgaggcagcatatagcgattgaaaagtgtgtcacgt 11487249  T
Q  217 tgtcatctgtgccaaaattgattcagtgcagcaattttcttcaagacttgagactctgtaagattccgtctctcactgcatttcctacggagggtctacc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11487250 tgtcatctgtgccaaaattgattcagtgcagcaattttcttcaagacttgagactctataagattccgtctctcactgcatttcctacggagggtctacc 11487349  T
Q  317 tacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcattta 416  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  11487350 tacttcattgcaatcactttgtgttcatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttgagtta 11487449  T
Q  417 tggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattccattttta 516  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11487450 tttagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagactaaaactatatgattgtaggtgtctggattccattttta 11487549  T
Q  517 ttttagaaagtccttcat 534  Q
    ||||||||||||||||||    
T  11487550 ttttagaaagtccttcat 11487567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 420 - 533
Target Start/End: Complemental strand, 44955304 - 44955191
Alignment:
Q  420 agtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagac-taacactatatgattgtaggtgtctggattccatttttatt 518  Q
    ||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||| ||||| ||  || ||||||| |||||||||| ||||| |||    
T  44955304 agtagctgtgatgcacttaaatcattcccacttgatggtttccctgtgctccaaagacttaacatta-gtggttgtaggagtctggattcaattttcatt 44955206  T
Q  519 ttagaaagtccttca 533  Q
    || ||||||||||||    
T  44955205 ttggaaagtccttca 44955191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 134 - 526
Target Start/End: Complemental strand, 10361732 - 10361340
Alignment:
Q  134 tgatggaaggaccgaactgtctttacttgggagtgactctccgtgtatgaggcagcatatagcgattgaaaagtgtgtcacgttgtcatctgtgccaaaa 233  Q
    ||||||||||||| || |||| || |||||||| || ||||| ||||||| ||| |||  || |||| ||||||| |  | | |||||||||||||||||    
T  10361732 tgatggaaggacccaattgtcatttcttgggagcgattctccatgtatgatgcaacatgcagtgattcaaaagtgcgctatgctgtcatctgtgccaaaa 10361633  T
Q  234 ttgattcagtgcagcaattttcttcaagacttgagactctgtaagattccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcac 333  Q
    ||||||| | | |||| || ||||  |  |||| ||||| ||||  || | |||||||||||||||||  |    |||||||| ||||||||||||||||    
T  10361632 ttgattctgagaagcacttgtcttacactcttgggactcggtaatctttcttctctcactgcatttccctcaagtggtctacccacttcattgcaatcac 10361533  T
Q  334 tttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgc 433  Q
    ||  | || | | ||||||||||||||| ||||| |||||||||||||||||||||||||  || |||||| | || ||||||     |||||||| | |    
T  10361532 ttcatattgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgactctacatttagatcatagctgtggttc 10361433  T
Q  434 acttacatcctttccacttgatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattccatttttattttagaaag 526  Q
    |||||||||||||||||| ||||||||||||||||||| || ||| ||  ||  |||||||||| ||||||||||||||| ||||| ||||||    
T  10361432 acttacatcctttccactcgatggtttccctgcgctccgaacacttaccatacgtgattgtaggagtctggattccatttatatttcagaaag 10361340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 309 - 526
Target Start/End: Original strand, 9841171 - 9841388
Alignment:
Q  309 ggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgc 408  Q
    |||||||| ||||||||||||||||||  | ||  |||||||||||||||||| ||||| |||||||||||||||||||||||||  || ||||||   |    
T  9841171 ggtctacccacttcattgcaatcacttcatattcgtagttgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtc 9841270  T
Q  409 ttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattc 508  Q
    |||| |||||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||  ||  |||||||||| |||| |||||    
T  9841271 ttcagttatggtggagctgtgatacacttacatccttcccacttgatggtttccctgcgctccaaacacttaccatacttgattgtaggagtctagattc 9841370  T
Q  509 catttttattttagaaag 526  Q
    ||||| ||||| ||||||    
T  9841371 catttatatttcagaaag 9841388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 133 - 530
Target Start/End: Complemental strand, 13853393 - 13852996
Alignment:
Q  133 atgatggaaggaccgaactgtctttacttgggagtgactctccgtgtatgaggcagcatatagcgattgaaaagtgtgtcacgttgtcatctgtgccaaa 232  Q
    |||||||||||||| || |||| || |||||||| || ||||| || | || ||| |||  || ||||||||||||||| | | |||||||| |||||||    
T  13853393 atgatggaaggacccaattgtcatttcttgggagcgattctccttgcacgatgcaacatgcagtgattgaaaagtgtgttatgctgtcatctatgccaaa 13853294  T
Q  233 attgattcagtgcagcaattttcttcaagacttgagactctgtaagattccgtctctcactgcatttcctacggagggtctacctacttcattgcaatca 332  Q
    |||||||  | | |||| |||||||||| |||||| ||||| | | ||||| |||||||||| ||||||  |    ||||| || ||| |||||||||||    
T  13853293 attgattttgagaagcacttttcttcaacacttgaaactctatgatattccatctctcactgtatttccgtcaagtggtctgccaactccattgcaatca 13853194  T
Q  333 ctttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatg 432  Q
    |||    |  | |  |||||||||||||||||||||||||||||||| |||||||||||||  || |||| |   |||  |||| |||||||||||||||    
T  13853193 cttgaaatagaaaaatgtgagaatttatcattccttcctcctgaaacatggagcaattacacatcgcttgcgagtcttactttacggagtagctgtgatg 13853094  T
Q  433 cacttacatcctttccacttgatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattccatttttattttagaaagtcct 530  Q
    ||||||||||||| | |||||||||||||||||| |||||||||||     ||  ||| ||||||  |||||||||||||  ||||||||||||||||    
T  13853093 cacttacatccttccaacttgatggtttccctgcactccaaagacttcggataagtgagtgtaggaatctggattccattaatattttagaaagtcct 13852996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 312 - 526
Target Start/End: Original strand, 10129241 - 10129455
Alignment:
Q  312 ctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttc 411  Q
    ||||| ||||||||||||||||||  | || | |  |||||||||||||| ||||| |||||||||||||||||||||||||  || ||||||    ||     
T  10129241 ctacccacttcattgcaatcacttcatattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtattg 10129340  T
Q  412 atttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattccat 511  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  || || |||||||| |||||||||||||    
T  10129341 atttacggagtagttgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaacacttaccatacataattgtaggagtctggattccat 10129440  T
Q  512 ttttattttagaaag 526  Q
    || ||||| ||||||    
T  10129441 ttatatttcagaaag 10129455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 254 - 531
Target Start/End: Original strand, 10502840 - 10503117
Alignment:
Q  254 tcttcaagacttgagactctgtaagattccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgag 353  Q
    ||||||| |||||  ||||| | | ||||| ||||||||||  ||||| |  || |||||||| ||||| ||||| |||||| || |||| || ||||||    
T  10502840 tcttcaacacttggaactctatgatattccatctctcactgtgtttcccaaagatggtctacccacttctttgcagtcacttagtattaaaaggtgtgag 10502939  T
Q  354 aatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttccacttg 453  Q
    |||||||| || |||||| |||||||||||||||||||||  |  ||||||   ||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  10502940 aatttatcctttcttcctgctgaaacgtggagcaattacacattgcttgtgagtcttgatttatggagtagctgtgatggactaacatcctttccacttg 10503039  T
Q  454 atggtttccctgcgctccaaagac-taacactatatgattgtaggtgtctggattccatttttattttagaaagtcctt 531  Q
    ||||||||||||| |||||||||| ||||| ||  | | ||||||  | ||||||||||||||| |||| |||||||||    
T  10503040 atggtttccctgcactccaaagacttaacatta-gtaactgtaggaatttggattccatttttactttaaaaagtcctt 10503117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 309 - 538
Target Start/End: Complemental strand, 11779738 - 11779509
Alignment:
Q  309 ggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgc 408  Q
    |||||||| ||||||||||||||||||  | ||||   ||||||||| ||||| || || ||| |||||||||||||||||||||  || ||||||   |    
T  11779738 ggtctacccacttcattgcaatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtc 11779639  T
Q  409 ttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattc 508  Q
    || ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |||     ||  |||||||||| ||||||||||    
T  11779638 tttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtaggagtctggattc 11779539  T
Q  509 catttttattttagaaagtccttcatctca 538  Q
    ||||| |||||||||||  |||||| ||||    
T  11779538 catttatattttagaaacaccttcacctca 11779509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 309 - 526
Target Start/End: Original strand, 10519798 - 10520015
Alignment:
Q  309 ggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgc 408  Q
    |||||||| ||||||||||||||||||  | || |  |||||||||||||||| |||||||||||||||||||||| ||||||||  || ||||||   |    
T  10519798 ggtctacccacttcattgcaatcacttaatattcaatgttgtgagaatttatccttccttcctcctgaaacgtggatcaattacacatcacttgtgagtc 10519897  T
Q  409 ttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattc 508  Q
    || | || |   ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||  ||| ||| || ||| ||||||||||    
T  10519898 ttaagttctatcgtagctgtgatacacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatatgtgagtgcaggagtctggattc 10519997  T
Q  509 catttttattttagaaag 526  Q
    ||||| ||||| ||||||    
T  10519998 catttatatttcagaaag 10520015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 309 - 534
Target Start/End: Original strand, 10665779 - 10666004
Alignment:
Q  309 ggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgc 408  Q
    |||||||| ||||||||||||||||||  | ||    | |||||||||||||| ||||| |||||||||||||||||||||||||  || ||||||   |    
T  10665779 ggtctacccacttcattgcaatcacttaatattttgtggtgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgcgtc 10665878  T
Q  409 ttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattc 508  Q
    |  |||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||| |||     || |  |||||||| |||||| |||    
T  10665879 tagatttatgtcaaagttgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaacactttggatacagaattgtaggagtctggtttc 10665978  T
Q  509 catttttattttagaaagtccttcat 534  Q
    ||||| ||||||||||||||||||||    
T  10665979 catttgtattttagaaagtccttcat 10666004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 21 - 473
Target Start/End: Complemental strand, 10432094 - 10431633
Alignment:
Q  21 ttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaaca---ccatctgctttgcattggttgtcgtcaatnn 117  Q
    ||||||||| ||||||||||||||||| ||||| ||||| |||||||| | || ||  ||||||||   |||    || |||||||||||||||||||      
T  10432094 ttgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactactggaaacagagccaaacactatgcattggttgtcgtcaataa 10431995  T
Q  118 nnnnnnttgatatcaatg------atggaaggaccgaactgtctttacttgggagtgactctccgtgtatgaggcagcatatagcgattgaaaagtgtgt 211  Q
          || |||||||||      | ||||||||| |  |||| || |||| |||||| ||||||||||||| ||| ||| ||| ||||||||| |||||    
T  10431994 agaaagttaatatcaatgggcttgacggaaggaccaatttgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagtgattgaaaactgtgt 10431895  T
Q  212 cacgttgtcatctgtgccaaaattgattcagtgcagcaattttcttcaagacttgagactctgtaagattccgtctctcactgcatttcctacggagggt 311  Q
     | | | | |  ||||||||||||||||| | | |||| || ||||  | |||||||||||  |    || | |||||||||||||||||  |    |||    
T  10431894 taagctattagttgtgccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctctcactgcatttccatcaagtggt 10431795  T
Q  312 ctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttc 411  Q
    ||||| ||||||||||||||||||    || | |  |||||||||||||| ||||| |||||||||||||||||||||||||  || |||||    |||     
T  10431794 ctacccacttcattgcaatcacttgaaattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtcagtcttt 10431695  T
Q  412 atttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaa 473  Q
    |||||||||| || |||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  10431694 atttatggagcagttgtgattcacttacatcctttccactcgatggtttccctgccctccaa 10431633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 309 - 526
Target Start/End: Original strand, 10263014 - 10263231
Alignment:
Q  309 ggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgc 408  Q
    |||||||| ||||||||||||||||||    ||   | ||||||||||||||| |||||||||||||||||||||||||||||||  || ||||||   |    
T  10263014 ggtctacccacttcattgcaatcacttgaaattgtaaattgtgagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 10263113  T
Q  409 ttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagac-taacactatatgattgtaggtgtctggatt 507  Q
    || | |||    ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| || | ||| ||||| | |||||  |||||||||    
T  10263114 ttgagttaaatcgtagctgtgattcacttacatcctttccactcgatggtttccctgccctccaaacacttgaca-tatataagtgtagaagtctggatt 10263212  T
Q  508 ccatttttattttagaaag 526  Q
    |||||| ||||||||||||    
T  10263213 ccatttatattttagaaag 10263231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 348 - 533
Target Start/End: Complemental strand, 10373559 - 10373374
Alignment:
Q  348 tgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttc 447  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||||  || ||||||| |||| ||||||   ||||||||||| |||||| ||||||||    
T  10373559 tgtgagaatttatccttccttcctcttgaaatgtggagcaattacacatcacttgtgtggctttatttatatcgtagctgtgattcacttatatcctttc 10373460  T
Q  448 cacttgatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattccatttttattttagaaagtccttca 533  Q
    ||||||||||||||||||  ||||||| ||| |   ||    ||||||||  |||||||||||||| ||||| |||||||||||||    
T  10373459 cacttgatggtttccctgtcctccaaacacttatgatactgaattgtaggaatctggattccatttgtatttcagaaagtccttca 10373374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 309 - 525
Target Start/End: Original strand, 11771547 - 11771763
Alignment:
Q  309 ggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgc 408  Q
    |||||||| ||||||||||||  ||||  | ||||   ||||||||| ||||| || || ||| |||||||||||||| ||||||  || ||||||   |    
T  11771547 ggtctacccacttcattgcaaatacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagctattacacttcacttgtgagtc 11771646  T
Q  409 ttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattc 508  Q
    || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||  || ||| ||||||  ||||||||||    
T  11771647 tttatttatggagtagttgtgatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggttgtagtagtctggattc 11771746  T
Q  509 catttttattttagaaa 525  Q
    ||||  | |||||||||    
T  11771747 cattaatgttttagaaa 11771763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 288 - 471
Target Start/End: Original strand, 10530953 - 10531136
Alignment:
Q  288 ctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagca 387  Q
    |||||| ||||||| | | | |||||||| ||||||||||| ||||||||| || ||| ||||||||| ||| ||||| | |||||||||||||||||||    
T  10530953 ctcactacatttccgaagaatggtctacccacttcattgcagtcactttgtattgataattgtgagaagttagcattcatgcctcctgaaacgtggagca 10531052  T
Q  388 attacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctcc 471  Q
      ||||  || |||| |   |||  ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  10531053 gatacacatcgcttgagagtcttattttatggagtagctgtgatgcacttacatccttccaacttgatggtttccctgcactcc 10531136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 353 - 525
Target Start/End: Original strand, 10091151 - 10091323
Alignment:
Q  353 gaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttccactt 452  Q
    ||||||||| ||||| |||||||||||||||||||||||||  || ||||||   ||| ||||| |   |||||||||||||||||||||||||||||||    
T  10091151 gaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagactttatttaagtcatagctgtgatgcacttacatcctttccactt 10091250  T
Q  453 gatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattccatttttattttagaaa 525  Q
    |||||||||||||||||| ||  ||| ||  || ||| ||||||  ||||||||||||||  | |||||||||    
T  10091251 gatggtttccctgcgctcaaatcacttaccatagatggttgtagtagtctggattccattaatgttttagaaa 10091323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 353 - 525
Target Start/End: Original strand, 10198033 - 10198205
Alignment:
Q  353 gaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttccactt 452  Q
    ||||||||| ||||| |||||||||||||||||||||||||  || ||||||   ||| ||||| |   |||||||||||||||||||||||||||||||    
T  10198033 gaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagactttatttaagtcatagctgtgatgcacttacatcctttccactt 10198132  T
Q  453 gatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattccatttttattttagaaa 525  Q
    |||||||||||||||||| ||  ||| ||  || ||| ||||||  ||||||||||||||  | |||||||||    
T  10198133 gatggtttccctgcgctcaaatcacttaccatagatggttgtagtagtctggattccattaatgttttagaaa 10198205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 309 - 471
Target Start/End: Original strand, 10582924 - 10583086
Alignment:
Q  309 ggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgc 408  Q
    |||||||| ||||||||||||||||||  | |  | | ||||||||||||||| ||||| |||||||||||||||||||| ||||  || ||||||   |    
T  10582924 ggtctacccacttcattgcaatcacttcatatcgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtgagtc 10583023  T
Q  409 ttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctcc 471  Q
    || | || |   ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10583024 tttagttctatcgtagctgtgattcacttacatcctttccacttgatggtttccctgcgctcc 10583086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 526
Target Start/End: Original strand, 9851902 - 9852269
Alignment:
Q  159 cttgggagtgactctccgtgtatgaggcagcatatagcgattgaaaagtgtgtcacgttgtcatctgtgccaaaattgattcagtgcagcaattttcttc 258  Q
    |||| |||||| ||||||||||||| |||  || ||| ||||||||||||||| | | | | | |||||||||||||||||  | | |||| || ||||     
T  9851902 cttgagagtgattctccgtgtatgatgcaagatgtagagattgaaaagtgtgttaagctattagctgtgccaaaattgattatgagaagcacttgtctta 9852001  T
Q  259 aagacttgagactctgtaagattccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgagaattt 358  Q
     | |||||||||||  |    || | ||||||| |||||||||  |    |||||||| ||||||||||||||||||  | || | | ||||||||||||    
T  9852002 cacacttgagactcgattcactttcttctctcaatgcatttccatcaagtggtctacccacttcattgcaatcacttgatattgaaaattgtgagaattt 9852101  T
Q  359 atcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttccacttgatggt 458  Q
    ||| ||||| ||||||||||| |||||||| ||||  || ||||||   ||||  || |   ||||||||||| |||||| |||||||||||| ||||||    
T  9852102 atccttcctacctcctgaaacatggagcaactacacatcacttgtgagtcttcggttctatcgtagctgtgattcacttaaatcctttccactcgatggt 9852201  T
Q  459 ttccctgcgctccaaagac-taacactatatgattgtaggtgtctggattccatttttattttagaaag 526  Q
    ||||||| |||||||| || | ||| |  ||||||| ||  ||||||||||||||| ||||||||||||    
T  9852202 ttccctgtgctccaaacacttgaca-ttgatgattggagaagtctggattccatttatattttagaaag 9852269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 324 - 471
Target Start/End: Original strand, 10679788 - 10679935
Alignment:
Q  324 ttgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagta 423  Q
    ||||| ||||||||| || ||| ||||||||| ||| ||||| | |||||||||||||||||||  || |  || ||||||   |||  |||||||||||    
T  10679788 ttgcagtcactttgtattgataattgtgagaagttagcattcatgcctcctgaaacgtggagcagatatacatcgcttgtgagtcttattttatggagta 10679887  T
Q  424 gctgtgatgcacttacatcctttccacttgatggtttccctgcgctcc 471  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||||    
T  10679888 gctgtgatgcacttacatccttccaacttgatggtttccctgcactcc 10679935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 348 - 474
Target Start/End: Original strand, 10034355 - 10034481
Alignment:
Q  348 tgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttc 447  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||  || ||||||   ||| |||||     ||| ||||||||||||||||||||||    
T  10034355 tgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtctttatttaattcatagttgtgatgcacttacatcctttc 10034454  T
Q  448 cacttgatggtttccctgcgctccaaa 474  Q
    ||||||||||||||||||  |||||||    
T  10034455 cacttgatggtttccctgtcctccaaa 10034481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 11780036 - 11779938
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaat 115  Q
    ||||||||||| | ||||||||||||| ||| |||||   |||| ||||||| | ||||| ||||||| ||||||| ||||||||||||||||||||||    
T  11780036 acatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaaaaccatctactttgcattggttgtcgtcaat 11779938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 10034015 - 10034113
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaat 115  Q
    ||||||||| | | ||||||||| |||||||||||||   ||| |||||||| | ||||| ||||||||||||||| || ||||||||||||| |||||    
T  10034015 acatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaat 10034113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 488 - 534
Target Start/End: Original strand, 10085753 - 10085799
Alignment:
Q  488 tgattgtaggtgtctggattccatttttattttagaaagtccttcat 534  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  10085753 tgattgtaggtgtttggattccatttttattttagaaagtccttcat 10085799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 488 - 534
Target Start/End: Original strand, 10192673 - 10192719
Alignment:
Q  488 tgattgtaggtgtctggattccatttttattttagaaagtccttcat 534  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  10192673 tgattgtaggtgtttggattccatttttattttagaaagtccttcat 10192719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 10519500 - 10519598
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaat 115  Q
    ||||||||| | | ||||||||| ||||||| |||||   |||| ||||||||  ||||| ||||||||||||||| |||||||||||||||| |||||    
T  10519500 acatttgcccaccaaccttccttccatagaagaaattgtaataaaaggttgtgttcatctattggaaacaccatctactttgcattggttgtcttcaat 10519598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 393
Target Start/End: Complemental strand, 11146653 - 11146523
Alignment:
Q  263 cttgagactctgtaagattccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatca 362  Q
    |||||||||| |||  ||||||||| | ||||||||||| | ||| |||||||| ||||| |||||   ||||  | || ||||||| ||||| ||||||    
T  11146653 cttgagactcagtagaattccgtctttaactgcatttccaagggaaggtctacccacttctttgcaggaacttcttatttatagttgcgagaagttatca 11146554  T
Q  363 ttccttcctcctgaaacgtggagcaattaca 393  Q
    ||| | ||||| |||||||||||||||||||    
T  11146553 ttcatgcctccggaaacgtggagcaattaca 11146523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 9840887 - 9840971
Alignment:
Q  31 accttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaat 115  Q
    ||||||||| |||||||||||||   ||| |||||||| | ||||| ||||||||||||||| || ||||||||||||| |||||    
T  9840887 accttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaat 9840971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 10079426 - 10079521
Alignment:
Q  18 catttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtca 113  Q
    ||||| |||||| ||||||||||||||||| |||||   |||| |||||||||  |||| |||||||||||| || ||||| |||||||| |||||    
T  10079426 cattttcctagcgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggaaacaccacctactttggattggttgccgtca 10079521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 10128940 - 10129038
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaat 115  Q
    ||||||||| | | ||||||||| ||||||| |||||   ||| |||||||| | ||||| ||||||||||||||| || ||||||||||||| |||||    
T  10128940 acatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaat 10129038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 10373899 - 10373801
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaat 115  Q
    ||||||||| | | ||||||||| ||||||| |||||   ||| |||||||| | ||||| ||||||||||||||| || ||||||||||||| |||||    
T  10373899 acatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaat 10373801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 10582625 - 10582723
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaat 115  Q
    ||||||||||||||| ||||||||||||||| ||||| | |||  ||||||||  ||||| |||||||||    |  ||||||||||||||||||||||    
T  10582625 acatttgcctagccatcttccttgcatagaagaaattgaaatagaaggttgtgttcatctattggaaacagagcccactttgcattggttgtcgtcaat 10582723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 393
Target Start/End: Complemental strand, 11244309 - 11244195
Alignment:
Q  279 attccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaa 378  Q
    ||||| ||||||||||||||||||||  | |||||||| ||||| |||||| |||||  | ||   | |||||| |  ||| ||||||| ||||||||||    
T  11244309 attccatctctcactgcatttcctacaaatggtctacccacttctttgcaaacacttcatattcgcaattgtgacagcttaacattcctacctcctgaaa 11244210  T
Q  379 cgtggagcaattaca 393  Q
    |||||||||||||||    
T  11244209 cgtggagcaattaca 11244195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 11771249 - 11771347
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaat 115  Q
    |||||| |||| | ||||||||||||| ||| |||||   || | ||||||| | ||||| ||||||| ||||||| ||||||||||||||||||||||    
T  11771249 acattttcctaccaaccttccttgcatcgaagaaattgtaatcaaaggttgttctcatctattggaaaaaccatctactttgcattggttgtcgtcaat 11771347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 10186396 - 10186491
Alignment:
Q  18 catttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtca 113  Q
    |||||||||||  ||||||||||||||||| |||||   |||| |||||||||  |||| ||||| |||||| || ||||| |||||||| |||||    
T  10186396 catttgcctagtgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggatacaccacctactttggattggttgccgtca 10186491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 393
Target Start/End: Complemental strand, 11157803 - 11157689
Alignment:
Q  279 attccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaa 378  Q
    ||||||||| | ||||||||||| | ||| |||||||| ||||| |||||   ||||  | || ||| ||| ||||| ||||||||| | ||||| ||||    
T  11157803 attccgtctttaactgcatttccaagggaaggtctacccacttctttgcaggaacttcttatttataattgcgagaagttatcattcatgcctccggaaa 11157704  T
Q  379 cgtggagcaattaca 393  Q
    |||||||||||||||    
T  11157703 cgtggagcaattaca 11157689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 393
Target Start/End: Complemental strand, 11128811 - 11128698
Alignment:
Q  280 ttccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaac 379  Q
    |||||||| | |||| |||||| | ||| |||||||| ||||| |||||   ||||||| || ||| ||| ||||| ||||||||| | ||||| |||||    
T  11128811 ttccgtctttaactgtatttccaagggatggtctacccacttctttgcaggaactttgtatttataattgcgagaagttatcattcatgcctccggaaac 11128712  T
Q  380 gtggagcaattaca 393  Q
     |||||||||||||    
T  11128711 atggagcaattaca 11128698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 473
Target Start/End: Original strand, 13163264 - 13163457
Alignment:
Q  280 ttccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaac 379  Q
    |||| |||||| |||| ||||| || || |||||||| ||||||||||| |||||| |  || ||  ||||  ||||||| ||||||| || | ||||||    
T  13163264 ttccatctctcgctgcttttccaacagatggtctacccacttcattgcagtcacttagaattgatgattgtccgaatttagcattcctgccacttgaaac 13163363  T
Q  380 gtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaa 473  Q
     ||| |||||||||  ||||||||| |  | || ||||||| ||| ||| |||||||||| || || ||  | ||||||||||| || ||||||    
T  13163364 atggggcaattacacatctcttgtgactttgcacttatggaatagttgttatgcacttacctcattccctttggatggtttcccagccctccaa 13163457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 9851768 - 9851852
Alignment:
Q  31 accttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaat 115  Q
    ||||||||| ||||||| |||||   ||| |||||||| | ||||| ||||||||||||||| || ||| ||||||||| |||||    
T  9851768 accttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcgttggttgtcttcaat 9851852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 10530662 - 10530749
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattgg 104  Q
    |||||| |||||||||||  ||| ||||||| ||||||| |||  ||||||||| | ||| ||||||||||||  | |||||||||||    
T  10530662 acattttcctagccacctatcttccatagaagaaattcaaatagaaggttgtgctcgtctattggaaacaccacatactttgcattgg 10530749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 10502600 - 10502694
Alignment:
Q  19 atttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtca 113  Q
    |||| ||| |||||||| ||| ||||||| |||||   |||  ||||||||| ||||| |||||||||||  || ||||||||||| ||||||||    
T  10502600 atttaccttgccacctttctttcatagaagaaattgtaatagaaggttgtgctcatctattggaaacaccgcctactttgcattggctgtcgtca 10502694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 393
Target Start/End: Original strand, 8863573 - 8863686
Alignment:
Q  280 ttccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaac 379  Q
    |||||||| | ||||||||||| | ||| ||| |||| ||||| |||||  || ||  | || ||| |||||||||  |||||||| | ||||| |||||    
T  8863573 ttccgtctttaactgcatttccaagggaaggtgtacccacttctttgcaggcaattcatatttataattgtgagaagctatcattcatgcctccagaaac 8863672  T
Q  380 gtggagcaattaca 393  Q
    ||||||||||||||    
T  8863673 gtggagcaattaca 8863686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 10090806 - 10090875
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaaca 86  Q
    ||||||||||||| |||||||||||||| || |||||   |||| ||||||| | ||||| |||||||||    
T  10090806 acatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaaca 10090875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 10197688 - 10197757
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaaca 86  Q
    ||||||||||||| |||||||||||||| || |||||   |||| ||||||| | ||||| |||||||||    
T  10197688 acatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaaca 10197757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 10262713 - 10262782
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaaca 86  Q
    ||||||||||||| | ||||||||||||||| |||||   |||| ||||||| | ||||| |||||||||    
T  10262713 acatttgcctagcaaacttccttgcatagaagaaattgtaataaaaggttgttctcatctattggaaaca 10262782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 312 - 474
Target Start/End: Complemental strand, 55355 - 55193
Alignment:
Q  312 ctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttc 411  Q
    ||||| ||||||||||||||||||  | || | |  |||||||||||||| ||||| |||||||||||||||||||||||||  || |||||    |||     
T  55355 ctacccacttcattgcaatcacttcatattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtcagtctta 55256  T
Q  412 atttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaa 474  Q
    || |||    ||| |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  55255 atatatcatatagttgtgattcacttacatcctttccacttgatggtttccctgccctccaaa 55193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 55656 - 55558
Alignment:
Q  17 acatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtcaat 115  Q
    ||||||||| | | ||||||||| ||||||| |||||   ||| |||||||| | ||||| ||||||||||||||| || ||||||||||||| |||||    
T  55656 acatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatctactctgcattggttgtcttcaat 55558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 254 - 478
Target Start/End: Complemental strand, 17850737 - 17850513
Alignment:
Q  254 tcttcaagacttgagactctgtaagattccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgag 353  Q
    ||||||| |||||| ||||  | | ||||||||||||||||||||||| ||||| | || ||  ||||||||||| ||||||  | ||| ||  ||| ||    
T  17850737 tcttcaacacttgacactcaatgatattccgtctctcactgcatttccgacggatgttcaactcacttcattgcagtcacttcatattagtatgtgtaag 17850638  T
Q  354 aatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttccacttg 453  Q
    |||||||| ||| | |||||||||||||||| ||||||||  || |||| |   ||| | |||||||| ||||| ||||||||||| || ||  || | |    
T  17850637 aatttatccttcatgcctcctgaaacgtggaacaattacacatcacttgcgagtcttgagttatggagcagctgcgatgcacttacctctttctcattgg 17850538  T
Q  454 atggtttccctgcgctccaaagact 478  Q
    ||||||| ||||||||| |||||||    
T  17850537 atggttttcctgcgctcgaaagact 17850513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 353 - 533
Target Start/End: Original strand, 26909245 - 26909425
Alignment:
Q  353 gaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttccactt 452  Q
    ||||||||| ||||| |||| |||||| |||||||||||||  || ||||||    || | ||||    ||||||||||||||||  ||| ||||| |||    
T  26909245 gaatttatccttcctacctcttgaaacctggagcaattacacatcacttgtgaacattgagttatatcatagctgtgatgcacttgaatcatttccgctt 26909344  T
Q  453 gatggtttccctgcgctccaaagactaacactatatgattgtaggtgtctggattccatttttattttagaaagtccttca 533  Q
    |||||||||||||| |||||||| || | | | || ||||||||| || |||||||||||| ||||| ||||| |||||||    
T  26909345 gatggtttccctgctctccaaagtcttaaaatttacgattgtaggagtgtggattccatttatatttcagaaactccttca 26909425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 26908906 - 26908998
Alignment:
Q  20 tttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatctgctttgcattggttgtcgtc 112  Q
    |||||||||| ||||||||||||||||| |||||   |||| ||||||    ||||| ||||||||||||||| |||| |||||| |||||||    
T  26908906 tttgcctagcaaccttccttgcatagaagaaattgtaataaaaggttgctatcatctattggaaacaccatctactttacattgggtgtcgtc 26908998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 473
Target Start/End: Complemental strand, 143724 - 143531
Alignment:
Q  280 ttccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaac 379  Q
    |||| |||||| |||| ||||| || || |||||||| ||||||||||| |||||| |  || ||  ||||  ||||||| ||||||| || | ||||||    
T  143724 ttccatctctcgctgcttttccaacagatggtctacccacttcattgcagtcacttagaattgatgattgtccgaatttagcattcctgccacttgaaac 143625  T
Q  380 gtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaa 473  Q
     ||| |||||||||  ||||||||| |  | || ||||||| ||| ||| |||||||||| || || ||  | ||||||||||| || ||||||    
T  143624 atggggcaattacacatctcttgtgactttgcacttatggaatagttgttatgcacttacctcattccctttggatggtttcccagccctccaa 143531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 473
Target Start/End: Complemental strand, 152029 - 151836
Alignment:
Q  280 ttccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttaatagttgtgagaatttatcattccttcctcctgaaac 379  Q
    |||| |||||| |||| ||||| || || |||||||| ||||||||||| |||||| |  || ||  ||||  ||||||| ||||||| || | ||||||    
T  152029 ttccatctctcgctgcttttccaacagatggtctacccacttcattgcagtcacttagaattgatgattgtccgaatttagcattcctgccacttgaaac 151930  T
Q  380 gtggagcaattacaagtctcttgtgtcgcttcatttatggagtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaa 473  Q
     ||| |||||||||  ||||||||| |  | || ||||||| ||| ||| |||||||||| || || ||  | ||||||||||| || ||||||    
T  151929 atggggcaattacacatctcttgtgactttgcacttatggaatagttgttatgcacttacctcattccctttggatggtttcccagccctccaa 151836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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