View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17093_low_8 (Length: 539)

Name: NF17093_low_8
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17093_low_8
NF17093_low_8
[»] chr7 (30 HSPs)
chr7 (3-347)||(4876222-4876566)
chr7 (346-525)||(4876681-4876860)
chr7 (3-137)||(19414426-19414560)
chr7 (3-261)||(10983805-10984074)
chr7 (8-260)||(2641764-2642023)
chr7 (352-424)||(19842138-19842210)
chr7 (5-287)||(17915350-17915640)
chr7 (361-424)||(20053609-20053672)
chr7 (151-260)||(48358182-48358291)
chr7 (369-424)||(232260-232315)
chr7 (373-424)||(9261035-9261086)
chr7 (353-424)||(10983397-10983468)
chr7 (5-129)||(2277941-2278066)
chr7 (369-461)||(17919110-17919201)
chr7 (373-424)||(19142404-19142455)
chr7 (373-424)||(20741803-20741854)
chr7 (151-261)||(20053161-20053271)
chr7 (371-424)||(17915971-17916024)
chr7 (370-425)||(10646485-10646541)
chr7 (151-259)||(19142851-19142959)
chr7 (151-259)||(20742250-20742358)
chr7 (373-424)||(9245012-9245063)
chr7 (151-260)||(19842542-19842651)
chr7 (346-417)||(8807776-8807846)
chr7 (13-133)||(17918495-17918618)
chr7 (11-70)||(19143048-19143109)
chr7 (2-94)||(19842717-19842811)
chr7 (11-70)||(20742447-20742508)
chr7 (9-70)||(9704469-9704529)
chr7 (177-249)||(17918670-17918742)
[»] chr8 (26 HSPs)
chr8 (3-261)||(5826067-5826333)
chr8 (3-261)||(5828666-5828932)
chr8 (5-93)||(18565792-18565881)
chr8 (5-117)||(23433153-23433266)
chr8 (3-82)||(5825666-5825746)
chr8 (47-255)||(24987532-24987748)
chr8 (352-424)||(18566179-18566251)
chr8 (367-424)||(13645683-13645740)
chr8 (367-424)||(13746108-13746165)
chr8 (5-260)||(13645029-13645294)
chr8 (5-260)||(13745454-13745719)
chr8 (369-424)||(23432586-23432641)
chr8 (352-424)||(5826674-5826746)
chr8 (370-424)||(211050-211104)
chr8 (370-424)||(241152-241206)
chr8 (370-424)||(724673-724727)
chr8 (370-424)||(794507-794561)
chr8 (172-261)||(23433010-23433099)
chr8 (352-424)||(5829279-5829351)
chr8 (152-242)||(16227426-16227516)
chr8 (367-417)||(28857038-28857088)
chr8 (370-424)||(27118299-27118354)
chr8 (371-424)||(13303526-13303580)
chr8 (370-419)||(24262399-24262449)
chr8 (283-347)||(5826483-5826547)
chr8 (283-347)||(5829088-5829152)
[»] chr1 (5 HSPs)
chr1 (5-261)||(9756618-9756883)
chr1 (370-424)||(9985213-9985267)
chr1 (377-422)||(17496322-17496368)
chr1 (371-424)||(24005895-24005948)
chr1 (370-425)||(41029691-41029747)
[»] chr6 (19 HSPs)
chr6 (5-260)||(17208781-17209046)
chr6 (3-118)||(20396719-20396835)
chr6 (3-281)||(19731255-19731543)
chr6 (367-424)||(19731905-19731962)
chr6 (370-424)||(21686692-21686746)
chr6 (367-423)||(10482457-10482513)
chr6 (369-424)||(19134105-19134160)
chr6 (370-424)||(27124699-27124753)
chr6 (5-53)||(34659757-34659805)
chr6 (370-421)||(1637034-1637085)
chr6 (373-424)||(14201688-14201739)
chr6 (370-424)||(239497-239551)
chr6 (363-424)||(7775138-7775199)
chr6 (373-424)||(28952281-28952332)
chr6 (367-424)||(10821473-10821531)
chr6 (374-422)||(225831-225879)
chr6 (10-106)||(10481873-10481972)
chr6 (171-262)||(10482043-10482135)
chr6 (396-424)||(26239017-26239045)
[»] chr5 (18 HSPs)
chr5 (3-260)||(21391317-21391581)
chr5 (5-260)||(21216509-21216772)
chr5 (3-198)||(28760256-28760460)
chr5 (352-424)||(25570120-25570192)
chr5 (367-424)||(9824660-9824717)
chr5 (5-249)||(19569699-19569951)
chr5 (3-118)||(24885449-24885565)
chr5 (3-113)||(24163465-24163575)
chr5 (352-424)||(24884895-24884967)
chr5 (369-424)||(21215341-21215396)
chr5 (369-405)||(21216101-21216137)
chr5 (5-53)||(23110088-23110136)
chr5 (373-424)||(24492093-24492145)
chr5 (385-424)||(28760859-28760898)
chr5 (151-261)||(24163629-24163739)
chr5 (155-192)||(9824173-9824210)
chr5 (375-424)||(16790953-16791004)
chr5 (77-117)||(18304227-18304267)
[»] chr2 (22 HSPs)
chr2 (5-261)||(8685425-8685689)
chr2 (3-137)||(16197675-16197810)
chr2 (367-424)||(26654351-26654408)
chr2 (151-259)||(26653233-26653341)
chr2 (371-424)||(26652808-26652861)
chr2 (151-282)||(16152270-16152402)
chr2 (352-424)||(25348452-25348524)
chr2 (5-133)||(26653575-26653705)
chr2 (369-424)||(8686057-8686112)
chr2 (352-424)||(16197130-16197201)
chr2 (370-424)||(22311225-22311280)
chr2 (374-424)||(24216381-24216431)
chr2 (371-424)||(24764145-24764199)
chr2 (387-424)||(16151887-16151924)
chr2 (368-424)||(18848733-18848790)
chr2 (371-422)||(25916223-25916275)
chr2 (40-118)||(16152442-16152521)
chr2 (151-261)||(24215920-24216030)
chr2 (151-260)||(22132328-22132437)
chr2 (373-424)||(17417103-17417155)
chr2 (370-417)||(19565073-19565121)
chr2 (373-424)||(21547913-21547965)
[»] chr3 (24 HSPs)
chr3 (3-261)||(21318216-21318484)
chr3 (5-137)||(13178076-13178211)
chr3 (5-137)||(13340974-13341109)
chr3 (5-261)||(9323368-9323634)
chr3 (375-424)||(15330957-15331006)
chr3 (374-424)||(9323970-9324020)
chr3 (370-424)||(11360491-11360545)
chr3 (374-424)||(13340429-13340479)
chr3 (371-424)||(21318761-21318814)
chr3 (151-258)||(11829599-11829704)
chr3 (373-424)||(13177529-13177580)
chr3 (10-133)||(15331525-15331650)
chr3 (370-425)||(16198672-16198728)
chr3 (370-424)||(14426911-14426966)
chr3 (371-424)||(20311368-20311422)
chr3 (154-260)||(21528163-21528269)
chr3 (170-259)||(13177947-13178036)
chr3 (371-424)||(44755363-44755416)
chr3 (5-36)||(11829824-11829855)
chr3 (170-261)||(13340845-13340936)
chr3 (371-420)||(38076035-38076085)
chr3 (98-135)||(3646912-3646949)
chr3 (370-422)||(13291367-13291420)
chr3 (209-261)||(15331399-15331451)
[»] chr4 (10 HSPs)
chr4 (5-134)||(22316914-22317045)
chr4 (369-424)||(22316369-22316424)
chr4 (367-424)||(16321860-16321917)
chr4 (367-424)||(8912056-8912113)
chr4 (367-424)||(12333752-12333809)
chr4 (170-261)||(5842896-5842987)
chr4 (346-424)||(5842480-5842558)
chr4 (373-424)||(22222350-22222402)
chr4 (9-70)||(13570736-13570796)
chr4 (396-424)||(20245766-20245794)
[»] scaffold0032 (2 HSPs)
scaffold0032 (15-134)||(79119-79237)
scaffold0032 (371-424)||(79625-79679)
[»] scaffold0002 (3 HSPs)
scaffold0002 (5-137)||(128777-128912)
scaffold0002 (373-424)||(129408-129459)
scaffold0002 (170-259)||(128952-129041)
[»] scaffold0300 (3 HSPs)
scaffold0300 (3-247)||(11869-12122)
scaffold0300 (371-422)||(7748-7799)
scaffold0300 (378-424)||(12474-12520)
[»] scaffold0041 (2 HSPs)
scaffold0041 (367-424)||(26876-26933)
scaffold0041 (10-260)||(26227-26486)
[»] scaffold0062 (1 HSPs)
scaffold0062 (28-261)||(2386-2627)
[»] scaffold0711 (2 HSPs)
scaffold0711 (9-133)||(1837-1964)
scaffold0711 (369-418)||(1309-1358)
[»] scaffold0520 (1 HSPs)
scaffold0520 (373-424)||(7635-7686)
[»] scaffold0068 (3 HSPs)
scaffold0068 (46-137)||(57138-57236)
scaffold0068 (372-424)||(56796-56848)
scaffold0068 (151-249)||(57019-57117)
[»] scaffold0653 (1 HSPs)
scaffold0653 (373-424)||(4699-4750)
[»] scaffold0527 (4 HSPs)
scaffold0527 (98-137)||(672-711)
scaffold0527 (98-137)||(8735-8774)
scaffold0527 (151-261)||(541-651)
scaffold0527 (151-261)||(8604-8714)


Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 3 - 347
Target Start/End: Original strand, 4876222 - 4876566
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttgcagagttttggcacagaaaaatagcaaagtct 102  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4876222 tcactccttaggatttctaagatataaacttgtaaataaatcctaagtgttctgcgttatttgatttgcagagttttggcacagaaaaatagcaaagtct 4876321  T
Q  103 tgttgcttcttcttcaagtcttcagctccttttattgttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4876322 tgttgcttcttcttcaagtcttcagctccttttattgttgacagagttttggagaaaagtgccatcacaaatagagtcgttgagaagcttttatcaagaa 4876421  T
Q  203 tgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgcataataagaattatatgttgctctctcagattcaagtagcc 302  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4876422 tactagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgcagaataagaattatatgttgctctctcagattcaagtagcc 4876521  T
Q  303 atttagattttgtgtctaatgtctttcacataatatgttgagatc 347  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  4876522 atttagattttgtgtctgatgtctttcacataatatgttgagatc 4876566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 346 - 525
Target Start/End: Original strand, 4876681 - 4876860
Alignment:
Q  346 tccttgcttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatcaaggtcgaatcaagaggacttt 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4876681 tccttgcttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatcaaggtcgaatcaagaggacttt 4876780  T
Q  446 tatgaaccattcttgtctaatggtttgaatcttcccacgaatttaaggttctcaaatttccaaaagacacaagaagcgtt 525  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4876781 tatgaaccattcctgtctaatggtttgaatctttccacgaatttaaggttctcaaatttccaaaagacacaagaagcgtt 4876860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 19414426 - 19414560
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||  || |||||||||| |||||||||||| |  ||||    
T  19414426 tcactccttaggatttctaagatataaacttgaaaataa-tccttagtgttttgcgctatttgacatgacagagttttgacacagaaaaatatctgagtc 19414524  T
Q  102 ttgttgcttcttcttcaagtcttcagctccttttat 137  Q
    ||||||||||||||||| |||||||||| |||||||    
T  19414525 ttgttgcttcttcttcaggtcttcagcttcttttat 19414560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 10984074 - 10983805
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaa---tcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaa 98  Q
    |||||| ||||||||||||||||||||||||||||| |||   ||   | |||| ||| |||||||||||| || |||||||||||| |||||||||| |    
T  10984074 tcactctttaggatttctaagatataaacttgaaaaaaaaaaatcactactgttttgcattatttgatttgacaaagttttggcacaaaaaaatagcaga 10983975  T
Q  99 gtcttgttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagc 190  Q
    |||||||||||| |||||||  ||||||||  ||||||| |        |||| |||  || |||||||| || || | ||||||||||| ||||||||     
T  10983974 gtcttgttgctttttcttcagatcttcagcatcttttataggtagtgatttgagagacgtt-ggagaagaatgtcagcgcaaatagagtcattgagaagg 10983876  T
Q  191 ttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
    ||| |||| ||||| | ||||||| |||| |||||||||| |||||||||||| ||||| |||||||||||    
T  10983875 tttgatcatgaatgttggccctttgcctgatatggataatcccgttggaaagtactttgaatttcctttgc 10983805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 2642023 - 2641764
Alignment:
Q  8 ccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtcttgtt 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||| |||||||||||||||||||||||| ||  |||||||    
T  2642023 ccttaggatttctaagatataaacttgaaaataaatcttaagtgttttgagctatttgatttgacagagttttggcacagaaaaatagtaa--tcttgtt 2641926  T
Q  107 gcttcttcttcaagtc-ttcagctccttttat-tg-------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagcttttatc 197  Q
     ||||||||| | ||| ||||||| || |||| ||       |||| |||   ||| |||||||||  |   ||||||||||| |||||||||||| |||    
T  2641925 acttcttctttaggtctttcagcttctcttatatgcagtgatttgagaga-cgttgaagaagagtgttagtgcaaatagagtccttgagaagctttgatc 2641827  T
Q  198 aagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttg 260  Q
    ||||| | |  || ||| |||| ||||||||||||||||| ||||||||||  ||||||||||    
T  2641826 aagaacgttgacctttttcctgatatggataattccgttgaaaagtcctttaaatttcctttg 2641764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 19842210 - 19842138
Alignment:
Q  352 cttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19842210 cttcatgataagtagatcctgcacacttgaacatatgttagtattgcaattgttcttcaatactttgttatca 19842138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 17915350 - 17915640
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtctt 103  Q
    |||| |||||||||||||||||| || ||||||||||||| ||||| || |||| |||| |||||| ||||||  |||||||  |||||| || ||| ||    
T  17915350 actcattaggatttctaagatatgaa-ttgaaaataaatcataagtattttgcgctattagatttgacagagtaatggcacaataaaatatcagagtttt 17915448  T
Q  104 gttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagctttta 195  Q
    ||| |||||| |||| ||||||| ||||||| || |        |||| ||| | |||||||||||||  | | |||||| | ||||||||||||||| |    
T  17915449 gttacttctttttcaggtcttcaactcctttgataggcagtgatttgagaga-tattggagaagagtgaaaacgcaaataaaatcgttgagaagctttca 17915547  T
Q  196 tcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc-ataataagaattatatgttgctctct 287  Q
    |||||||   | | ||| | |||| |||||||||| || ||||||||||||||| |||||||||||   || | |||||||||||||||||||    
T  17915548 tcaagaactttggtcctctgcctgatatggataatcccattggaaagtcctttgaatttcctttgctgaaagaggaattatatgttgctctct 17915640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 20053609 - 20053672
Alignment:
Q  361 aagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20053609 aagtagatcctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 20053672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 48358291 - 48358182
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    ||||||||||||||||    ||||||||||||||||||||||  |||||||| | | ||||||| |||| ||||||||||||||||| | |||||||||     
T  48358291 ttggagaagagtgccagtgtaaatagagtcgttgagaagcttcaatcaagaacgttggccctttgcctgatatggataattccgttgaatagtcctttga 48358192  T
Q  251 atttcctttg 260  Q
    ||||||||||    
T  48358191 atttcctttg 48358182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 232315 - 232260
Alignment:
Q  369 tctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  232315 tctgcacacttgaacatatgttagtattccaattgttcttcaatattttgttatca 232260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 9261086 - 9261035
Alignment:
Q  373 cacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9261086 cacacttgaacatatgttagtattccaattattcttcaatactttgttatca 9261035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 10983468 - 10983397
Alignment:
Q  353 ttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||| |||||||| ||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||    
T  10983468 ttcatgataagtaaatcctgcacactagaacatatgttattatactaattgttcttcaatactttgttatca 10983397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 2277941 - 2278066
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttgc-agagttttggcacagaaaaatagcaaagtctt 103  Q
    |||||||| |||||| |||||||||||||| ||||||||| | |||  |||||  |||||||||||  | |||  ||||| || ||||||| ||||||||    
T  2277941 actccttatgatttccaagatataaacttggaaataaatcttgagttatctgccctatttgatttgagaaagtaatggcatagtaaaatagtaaagtctt 2278040  T
Q  104 gttgcttcttcttcaagtcttcagct 129  Q
    ||| ||||||||||| ||||||||||    
T  2278041 gttacttcttcttcatgtcttcagct 2278066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 461
Target Start/End: Original strand, 17919110 - 17919201
Alignment:
Q  369 tctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatcaaggtcgaa--tcaagaggacttttatgaaccattcttgt 461  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||   |||||  || ||| ||||| ||||||||||||||||    
T  17919110 tctgcacacttgaacatatgttaatattctaattgttcttcaatatttttttatca---tcgaaattctagatgacttgtatgaaccattcttgt 17919201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 19142455 - 19142404
Alignment:
Q  373 cacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  19142455 cacatttgaacatatgttagtatttcaattgttctttaatactttgttatca 19142404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 20741854 - 20741803
Alignment:
Q  373 cacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  20741854 cacatttgaacatatgttagtatttcaattgttctttaatactttgttatca 20741803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 20053161 - 20053271
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    ||||||| |||||||| ||||||||||||| |||| ||||||| |||| ||| | | ||| ||| |||| |||| ||||| ||  || |||||||||||     
T  20053161 ttggagaggagtgccaacacaaatagagtcattgacaagctttgatcatgaacgttggccttttgcctgatatgaataatcccaatgaaaagtcctttga 20053260  T
Q  251 atttcctttgc 261  Q
    |||||||||||    
T  20053261 atttcctttgc 20053271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 17915971 - 17916024
Alignment:
Q  371 tgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||| || ||||||||||||||| |||||||||||||||||| ||||||    
T  17915971 tgcacacttaaatatatgttagtattcctattgttcttcaatactttattatca 17916024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 10646541 - 10646485
Alignment:
Q  370 ctgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatcaa 425  Q
    ||||||||||||||||||||||  || |||||||||| |||||||||||||||||||    
T  10646541 ctgcacacttgaacatatgttaacatatccaattgttattcaatactttgttatcaa 10646485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 19142959 - 19142851
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    |||||||| ||||| | | ||||||||||| |||||||||||  ||||||||||    | |||| |||| ||||||||||||| |||  ||||||||||     
T  19142959 ttggagaaaagtgcaagcgcaaatagagtcattgagaagcttcaatcaagaatgtcttctctttgcctgatatggataattccattgagaagtcctttga 19142860  T
Q  251 atttccttt 259  Q
    |||||||||    
T  19142859 atttccttt 19142851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 20742358 - 20742250
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    |||||||| ||||| | | ||||||||||| |||||||||||  ||||||||||    | |||| |||| ||||||||||||| |||  ||||||||||     
T  20742358 ttggagaaaagtgcaagcgcaaatagagtcattgagaagcttcaatcaagaatgtcttctctttgcctgatatggataattccattgagaagtcctttga 20742259  T
Q  251 atttccttt 259  Q
    |||||||||    
T  20742258 atttccttt 20742250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 9245063 - 9245012
Alignment:
Q  373 cacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||| || |||||||||| |||||||||| ||||||||||    
T  9245063 cacacttgaacatatgctaatattccaattattcttcaatagtttgttatca 9245012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 19842651 - 19842542
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    ||||||||||||| || |||||| || |||||| |||| |||| |||||||||| | | | |||  ||| ||||||||||   ||||||| ||||||||     
T  19842651 ttggagaagagtgtcagcacaaagagtgtcgttaagaaactttgatcaagaatgttggtcgtttgtctgatatggataatcatgttggaacgtcctttga 19842552  T
Q  251 atttcctttg 260  Q
    ||||||||||    
T  19842551 atttcctttg 19842542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 417
Target Start/End: Original strand, 8807776 - 8807846
Alignment:
Q  346 tccttgcttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatacttt 417  Q
    ||||| |||||||| |  |||||  |||||||||||||||||| |||||||| ||| |||||||||||||||    
T  8807776 tcctttcttcatgatagataaatcatgcacacttgaacatatg-tagtattctaatcgttcttcaatacttt 8807846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 17918495 - 17918618
Alignment:
Q  13 ggatttctaagatataaacttgaaa-ataaa-tcctaagtgttctgcgttatttgatttgc-agagttttggcacagaaaaatagcaaagtcttgttgct 109  Q
    |||||||| |||||| ||||| ||| ||||| || |||||||| |||| |||| ||||||  |||||  ||||| ||||||||| || ||||||||| ||    
T  17918495 ggatttctgagatatgaacttcaaagataaaatcttaagtgttttgcgctattagatttgatagagtaatggcatagaaaaataacagagtcttgttact 17918594  T
Q  110 tcttcttcaagtcttcagctcctt 133  Q
    |||||||||  |||||| ||||||    
T  17918595 tcttcttcagatcttcaactcctt 17918618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 19143109 - 19143048
Alignment:
Q  11 taggatttctaagatataaacttga--aaataaatcctaagtgttctgcgttatttgatttg 70  Q
    |||||||||||||||||||||||||  ||  |||||||||||||| || | |||||||||||    
T  19143109 taggatttctaagatataaacttgaataagaaaatcctaagtgttttgtggtatttgatttg 19143048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 19842811 - 19842717
Alignment:
Q  2 atcactccttaggatttctaagatataaactt-gaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatag 94  Q
    |||| ||||||  |||||||||||||||| || |||||| ||| |||| |||| | || | ||||||||| |||||||||| |||||||||||||    
T  19842811 atcattccttataatttctaagatataaaatttgaaaatcaatgctaattgttttacgctgtttgatttgacagagttttgccacagaaaaatag 19842717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 20742508 - 20742447
Alignment:
Q  11 taggatttctaagatataaacttga--aaataaatcctaagtgttctgcgttatttgatttg 70  Q
    |||||||||||||||||||||||||  ||  |||||||||||||| || | |||||||||||    
T  20742508 taggatttctaagatataaacttgaataagaaaatcctaagtgttttgtggtatttgatttg 20742447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 9704529 - 9704469
Alignment:
Q  9 cttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg 70  Q
    |||||| ||||||||||||| | |||||||||||||||| ||||| |||| |||| ||||||    
T  9704529 cttagggtttctaagatatata-ttgaaaataaatcctatgtgttttgcgctattagatttg 9704469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 17918670 - 17918742
Alignment:
Q  177 agtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttg 249  Q
    |||||||||||| |||  |||||||| |   ||||||| |||| ||||||||||||||||| || ||||||||    
T  17918670 agtcgttgagaatcttcaatcaagaacgtcggccctttacctgatatggataattccgttgaaatgtcctttg 17918742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 9e-56; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 5826067 - 5826333
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||| |||| ||||| ||||    
T  5826067 tcactccttaggatttctaagatataaacttgaaaataaatcgtaagtgttttgcgttatttgatatgacagagttttggcacaaaaaagtagcagagtc 5826166  T
Q  102 ttgttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagcttt 193  Q
    ||||||||||||||||| |||||||||||||||||| |        |||| |||   | |||||| |||| || | |||||| |||||||||||||||||    
T  5826167 ttgttgcttcttcttcaggtcttcagctccttttataggcagtgatttgagaga-cgtgggagaaaagtgtcagcgcaaataaagtcgttgagaagcttt 5826265  T
Q  194 tatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
     |||||||| | | ||||||| |||| ||||||||||   |||||||||||||||| |||| ||||||    
T  5826266 gatcaagaaagttggccctttgcctgatatggataatcgtgttggaaagtcctttgaattttctttgc 5826333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 5828666 - 5828932
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||| |||| ||||| ||||    
T  5828666 tcactccttaggatttctaagatataaacttgaaaataaatcgtaagtgttttgcgttatttgatatgacagagttttggcacaaaaaagtagcagagtc 5828765  T
Q  102 ttgttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagcttt 193  Q
    ||||||||||||||||| |||||||||||||||||| |        |||| |||   | |||||| |||| || | |||||| |||||||||||||||||    
T  5828766 ttgttgcttcttcttcaggtcttcagctccttttataggcagtgatttgagaga-cgtgggagaaaagtgtcagcgcaaataaagtcgttgagaagcttt 5828864  T
Q  194 tatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
     |||||||| | | ||||||| |||| ||||||||||   |||||||||||||||| |||| ||||||    
T  5828865 gatcaagaaagttggccctttgcctgatatggataatcgtgttggaaagtcctttgaattttctttgc 5828932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 18565792 - 18565881
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaata 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||    
T  18565792 actccttaggatttctaagatataaacttgaaaataaatcctaagtgttttgcgttatttgatttgacaaagatttggcacagaaaaata 18565881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 23433266 - 23433153
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| || |||  ||||| |||||||||||| ||||||    
T  23433266 actccttaggatttctaagatataaacttgaaaataaatcctaagggttttgcattatttgatttgacaaagtaatggcatagaaaaatagcagagtctt 23433167  T
Q  104 gttgcttcttcttc 117  Q
    ||| ||||||||||    
T  23433166 gttacttcttcttc 23433153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 5825666 - 5825746
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggc 82  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  5825666 tcactccttaggatttctaagatataaacttgaaaataaatcgtaagtgttttgcgttatttgatttgacagagttttggc 5825746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 255
Target Start/End: Complemental strand, 24987748 - 24987532
Alignment:
Q  47 aagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtcttgttgcttcttcttcaagtcttcagctccttttattg------ 139  Q
    ||||||| |||| |||| |||||| ||||||  || ||| | ||||||||| ||||||||||||||||||||| ||||||||| |||||||| |          
T  24987748 aagtgttttgcgctattagatttgacagagtaatgacacggtaaaatagcagagtcttgttgcttcttcttcaggtcttcagccccttttataggcagtg 24987649  T
Q  140 --ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttg 237  Q
      |||| |||  || ||||||||||| || | | ||||||||||||||||||||||  ||||||| | | ||||||| |||| |||||||||||||||||    
T  24987648 atttgaaagacgtt-ggagaagagtgtcaacgctaatagagtcgttgagaagctttggtcaagaacgttggccctttgcctgatatggataattccgttg 24987550  T
Q  238 gaaagtcctttggatttc 255  Q
    |||||||||||| |||||    
T  24987549 gaaagtcctttgaatttc 24987532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 18566179 - 18566251
Alignment:
Q  352 cttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18566179 cttcatgacagatagattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 18566251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 13645683 - 13645740
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  13645683 attctgcacacttgaacatatgttagtataccaattgttattcaatactttgttatca 13645740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 13746108 - 13746165
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  13746108 attctgcacacttgaacatatgttagtataccaattgttattcaatactttgttatca 13746165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 260
Target Start/End: Original strand, 13645029 - 13645294
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaa--tcctaagtgttctgcgttatttgatttg-cagagttttggcacag-aaaaatagcaaagt 100  Q
    |||| |||| |||||||||||||||||||||| | |||  ||||||||||| || | ||||||||||| ||||||  || ||||| |||||||| | |||    
T  13645029 actctttagcatttctaagatataaacttgaatacaaaaatcctaagtgttttgtgctatttgatttgacagagtaatgacacagtaaaaatagtagagt 13645128  T
Q  101 cttgttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagctt 192  Q
    ||||||  | |||||||| |||||||||||||| ||| |        |||| ||| | | ||||||||||| ||    ||||||||||||||||||||||    
T  13645129 cttgttaat-cttcttcaggtcttcagctccttatataggcagtcatttgagagaatct-ggagaagagtgtcagagtaaatagagtcgttgagaagctt 13645226  T
Q  193 ttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttg 260  Q
      |||||||||| | ||||||| |||| ||||||||||| ||||| | | || |||| ||||||||||    
T  13645227 caatcaagaatgttggccctttgcctgatatggataatttcgttgaataatcgtttgaatttcctttg 13645294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 260
Target Start/End: Original strand, 13745454 - 13745719
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaa--tcctaagtgttctgcgttatttgatttg-cagagttttggcacag-aaaaatagcaaagt 100  Q
    |||| |||| |||||||||||||||||||||| | |||  ||||||||||| || | ||||||||||| ||||||  || ||||| |||||||| | |||    
T  13745454 actctttagcatttctaagatataaacttgaatacaaaaatcctaagtgttttgtgctatttgatttgacagagtaatgacacagtaaaaatagtagagt 13745553  T
Q  101 cttgttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagctt 192  Q
    ||||||  | |||||||| |||||||||||||| ||| |        |||| ||| | | ||||||||||| ||    ||||||||||||||||||||||    
T  13745554 cttgttaat-cttcttcaggtcttcagctccttatataggcagtcatttgagagaatct-ggagaagagtgtcagagtaaatagagtcgttgagaagctt 13745651  T
Q  193 ttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttg 260  Q
      |||||||||| | ||||||| |||| ||||||||||| ||||| | | || |||| ||||||||||    
T  13745652 caatcaagaatgttggccctttgcctgatatggataatttcgttgaataatcgtttgaatttcctttg 13745719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 23432641 - 23432586
Alignment:
Q  369 tctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  23432641 tctgcacacttgaacatatgttagtattccaattgttcttcgatactttattatca 23432586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 5826674 - 5826746
Alignment:
Q  352 cttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||| ||||| ||  |||||||||| |||||||||| ||||||||||||||| ||||||||||||||||    
T  5826674 cttcatgataagtagatcatgcacacttggacatatgttaatattccaattgttctgcaatactttgttatca 5826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 211104 - 211050
Alignment:
Q  370 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||| ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  211104 ctgctcacttgaacatatgttagtattccaattgttcttcaacagtttgttatca 211050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 424
Target Start/End: Original strand, 241152 - 241206
Alignment:
Q  370 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||| ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  241152 ctgctcacttgaacatatgttagtattccaattgttcttcaacagtttgttatca 241206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 724727 - 724673
Alignment:
Q  370 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||| ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  724727 ctgctcacttgaacatatgttagtattccaattgttcttcaacagtttgttatca 724673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 424
Target Start/End: Original strand, 794507 - 794561
Alignment:
Q  370 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||| ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  794507 ctgctcacttgaacatatgttagtattccaattgttcttcaacagtttgttatca 794561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 23433099 - 23433010
Alignment:
Q  172 aatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
    |||||||||||| ||||||||  |||||||| | |  |||||| |||| ||||||||||||||||||||  ||||||| |||||||||||    
T  23433099 aatagagtcgttaagaagcttcaatcaagaacgttgtccctttgcctgatatggataattccgttggaagatcctttgaatttcctttgc 23433010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 5829279 - 5829351
Alignment:
Q  352 cttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||| ||||| ||  |||||||||| |||||||||  ||||||||||||||| ||||||||||||||||    
T  5829279 cttcatgataagtagatcatgcacacttggacatatgtttatattccaattgttctgcaatactttgttatca 5829351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 16227426 - 16227516
Alignment:
Q  152 tggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaag 242  Q
    |||| |||||||||| | |||||||||||||| ||||||||  | || ||| | | ||||||| |||| |||||||||| |||||||||||    
T  16227426 tggataagagtgccaacgcaaatagagtcgttaagaagcttcaaccacgaacgttggccctttgcctgatatggataatcccgttggaaag 16227516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 417
Target Start/End: Complemental strand, 28857088 - 28857038
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatacttt 417  Q
    |||||||||||||||| |||| ||||||||| |||| ||||||||||||||    
T  28857088 attctgcacacttgaatatatattagtattctaattattcttcaatacttt 28857038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 27118354 - 27118299
Alignment:
Q  370 ctgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||| |||||| ||| | |||||||||||||||||||| ||||||    
T  27118354 ctgcacacttgaacaaatgttactatattcaattgttcttcaatactttcttatca 27118299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 13303526 - 13303580
Alignment:
Q  371 tgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| ||||||||||    
T  13303526 tgcacacttgaacaaatattagtatatccaattgtttttcaatattttgttatca 13303580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 24262449 - 24262399
Alignment:
Q  370 ctgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgt 419  Q
    |||||| |||||||| || ||||||| ||||||||||||||||||||||||    
T  24262449 ctgcacgcttgaacaaatattagtatgtccaattgttcttcaatactttgt 24262399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 5826483 - 5826547
Alignment:
Q  283 tctctcagattcaagtagccatttagattttgtgtctaatgtctttcacataatatgttgagatc 347  Q
    |||||||||| ||||||||||   | ||| || |||| ||||| |||||||||||||||||||||    
T  5826483 tctctcagatccaagtagccagccaaattctgcgtctgatgtccttcacataatatgttgagatc 5826547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 5829088 - 5829152
Alignment:
Q  283 tctctcagattcaagtagccatttagattttgtgtctaatgtctttcacataatatgttgagatc 347  Q
    |||||||||| |||||||| |   | ||| ||||||| ||||| |||||||||||||||||||||    
T  5829088 tctctcagatccaagtagctagccaaattctgtgtctgatgtccttcacataatatgttgagatc 5829152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 9756883 - 9756618
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtctt 103  Q
    ||||||||||||||||||||||||| ||||||||  |||| |||||||  |||| ||||||||||| ||||||||||||||| ||||||| || ||||||    
T  9756883 actccttaggatttctaagatataagcttgaaaaataatcttaagtgtcttgcgctatttgatttgacagagttttggcacataaaaataacagagtctt 9756784  T
Q  104 gttgcttcttcttcaagtcttcagctccttttattg---------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagctttt 194  Q
    ||| ||||||||||| |||||||||||||| ||| |         |||| |||   |||||||||||||||| | ||||||||||||||||||| ||||     
T  9756783 gttacttcttcttcaggtcttcagctccttatataggccgttgatttgagaga-cgttggagaagagtgccagcgcaaatagagtcgttgagaatctttg 9756685  T
Q  195 atcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
    |||||||| | | |||| || |||| |||||||| ||| |||||||||||||||| |||||| ||||    
T  9756684 atcaagaacgttggcccattgcctgatatggatacttctgttggaaagtcctttgaatttccattgc 9756618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 424
Target Start/End: Original strand, 9985213 - 9985267
Alignment:
Q  370 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  9985213 ctgcacacttgaacatatgttagtatttcaattgttcttcaataatttgttatca 9985267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 17496368 - 17496322
Alignment:
Q  377 cttgaacatatgttagtat-tccaattgttcttcaatactttgttat 422  Q
    |||||||| || ||||||| |||||||||||||||||||||||||||    
T  17496368 cttgaacaaatattagtatatccaattgttcttcaatactttgttat 17496322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 24005948 - 24005895
Alignment:
Q  371 tgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||| ||  | |||||| ||| |||||||||    
T  24005948 tgcacacttgaacatatgttagtattctaaaagatcttcagtacgttgttatca 24005895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 425
Target Start/End: Original strand, 41029691 - 41029747
Alignment:
Q  370 ctgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatcaa 425  Q
    |||||||||| ||||||| | || || ||||||||||||||| ||||||||||||||    
T  41029691 ctgcacacttaaacatatatcagcatatccaattgttcttcattactttgttatcaa 41029747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 5 - 260
Target Start/End: Original strand, 17208781 - 17209046
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaa-ataaa-tcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||| ||||||||||| ||||||  ||  |||||||||||||||||||    
T  17208781 actccttaggatttctaagatataaacctgaaagataaaatcctaagtgttttgcgctatttgatttgacagagtaatgaaacagaaaaatagcaaagtc 17208880  T
Q  102 ttgttgcttcttcttcaagtcttcagctccttttattg---ttga---cagag-ttttggagaagagtgccatcacaaatagagtcgttgagaagctttt 194  Q
    ||||||   |||||||| |||||||||||||| ||| |    |||    ||||   ||||||||||||| || |||||||||| ||||||||||||||      
T  17208881 ttgttgtcacttcttcaggtcttcagctccttatataggcagtgaaataagagacgttggagaagagtgtcagcacaaatagaatcgttgagaagcttca 17208980  T
Q  195 atcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttg 260  Q
    |||||||| | | ||||||| |||| ||| ||||||||||||| ||||||||| | ||||||||||    
T  17208981 atcaagaacgttggccctttgcctgatatagataattccgttgaaaagtccttcgaatttcctttg 17209046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 20396719 - 20396835
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtg-ttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagt 100  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||| || |||| | ||||||||| |||| |||||||| |||||||||||| |||    
T  20396719 tcactccttaggatttctaagatataaaattgaaaat-aatcctaagtgtttttgcgctctttgatttgacagaattttggcatagaaaaatagcagagt 20396817  T
Q  101 cttgttgcttcttcttca 118  Q
     |||||||||||||||||    
T  20396818 tttgttgcttcttcttca 20396835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 19731255 - 19731543
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcac-agaaaaatagcaaagt 100  Q
    ||||||||||||| || |||||||||||| |||||||| |||||||||||| |||| ||||  ||||| ||||||| |||||| | |||||||||| |||    
T  19731255 tcactccttaggagttttaagatataaacctgaaaatatatcctaagtgttttgcgatattacatttgacagagttatggcacaataaaaatagcagagt 19731354  T
Q  101 cttgttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagctt 192  Q
    |||| || |||||| ||  |||||||||||| ||||| |        |||| |||   ||| ||||||||| ||||||||||| | || |||||||||||    
T  19731355 cttgatgtttcttcctcgggtcttcagctccatttataggcagtgatttgagaga-cgttgtagaagagtgtcatcacaaatataatcattgagaagctt 19731453  T
Q  193 ttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc-ataataagaattatatgttg 281  Q
    | |||||||  | | ||| ||| |||| ||| ||||||||| ||| ||| | ||||| |||||||||||   || |||||||||||||||    
T  19731454 tgatcaagatcgttggcctttttcctgatatagataattcctttgaaaatttctttgaatttcctttgcggaaagaagaattatatgttg 19731543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 19731905 - 19731962
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19731905 attctgcacacttgaacatatgttagtattccaattgttcatcaatactttgttatca 19731962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 21686746 - 21686692
Alignment:
Q  370 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21686746 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgtcatca 21686692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 10482457 - 10482513
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatc 423  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  10482457 attctgcacaattgaacatatgttagtattccaattgtttttcaatactttgttatc 10482513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 19134105 - 19134160
Alignment:
Q  369 tctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  19134105 tctgcacacttgaacacatgttagtattccaattgttcttcaatactttgatatca 19134160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 424
Target Start/End: Original strand, 27124699 - 27124753
Alignment:
Q  370 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  27124699 ctgcacacttgatcatatgttagtataccaattgttcttcaatactttgttatca 27124753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 34659757 - 34659805
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaatcctaagtgtt 53  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34659757 actccttaggatttctaagatataaacatgaaaataaatcctaagtgtt 34659805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 1637034 - 1637085
Alignment:
Q  370 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgtta 421  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  1637034 ctgcacacttgaacatatgttagtatacaaattgttcttcaatactttgtta 1637085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 424
Target Start/End: Original strand, 14201688 - 14201739
Alignment:
Q  373 cacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  14201688 cacacttgaacatatgttagtattccaattgtactttaatactttgttatca 14201739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 239551 - 239497
Alignment:
Q  370 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  239551 ctgcaaacttgaacatatgttagtattccaatttttcttaaatactttgttatca 239497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 7775199 - 7775138
Alignment:
Q  363 gtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||| ||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  7775199 gtaaatcctgtacacttgaacatatattagtatttcaattattcttcaatactttgttatca 7775138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 28952332 - 28952281
Alignment:
Q  373 cacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  28952332 cacacttgaacatatggtagtaatccaattgttcttcaatactttattatca 28952281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 10821473 - 10821531
Alignment:
Q  367 attctgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||| || ||| ||| || ||||||||||||||||||||||||||    
T  10821473 attctgcacacttgaacacatattaatatatctaattgttcttcaatactttgttatca 10821531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 225831 - 225879
Alignment:
Q  374 acacttgaacatatgttagtattccaattgttcttcaatactttgttat 422  Q
    ||||||||||||||||||| ||| ||||| ||||| |||||||||||||    
T  225831 acacttgaacatatgttaggatttcaattcttcttaaatactttgttat 225879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 10481873 - 10481972
Alignment:
Q  10 ttaggatttctaagatataaacttgaaaataaa--tcctaagtgttctgcgttatttgatttgc-agagttttggcacagaaaaatagcaaagtcttgtt 106  Q
    |||||||||||||||||| |||||||| | |||  ||||||||||| |  | |||| ||||||  |||||  |||||||| |||||||||||||||||||    
T  10481873 ttaggatttctaagatatgaacttgaatacaaaaatcctaagtgttttaagctattagatttggtagagtagtggcacagtaaaatagcaaagtcttgtt 10481972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 10482043 - 10482135
Alignment:
Q  171 aaatagagtcgttgagaagcttttatcaagaatgctagccctttccctg-gtatggataattccgttggaaagtcctttggatttcctttgca 262  Q
    ||||||||||||||||||||||  |||||||||| ||| ||||| | ||  | ||||||||| ||||| | |||||||||  ||| |||||||    
T  10482043 aaatagagtcgttgagaagcttcaatcaagaatgttagacctttgcttgattttggataatttcgttgaatagtcctttgagttttctttgca 10482135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 424
Target Start/End: Original strand, 26239017 - 26239045
Alignment:
Q  396 tccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||||||||||||||    
T  26239017 tccaattgttcttcaatactttgttatca 26239045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 260
Target Start/End: Complemental strand, 21391581 - 21391317
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||| | || |||| ||||||||||  ||||||| |||||||||||||||||| ||||    
T  21391581 tcactccttaggatttctaagatataaacttgaaaaataatcataattttt-tgcgctatttgatttaacagagttgtggcacagaaaaatagcagagtc 21391483  T
Q  102 ttgttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagcttt 193  Q
    ||||||||||||||||| ||| |||||||| ||||| |        |||| |||   |||||||||||||||| |  ||||||||||||| |||| ||||    
T  21391482 ttgttgcttcttcttcaggtcgtcagctccatttataggcaatgacttgagaga-cgttggagaagagtgccaacgtaaatagagtcgttaagaatcttt 21391384  T
Q  194 tatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttg 260  Q
     |||| ||||| | || |||| |||| || ||||||| || ||||||||| ||||| ||||||||||    
T  21391383 gatcacgaatgttggctctttgcctgatacggataatcccattggaaagtactttgaatttcctttg 21391317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 21216772 - 21216509
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtctt 103  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||  |||||||| ||||||| | ||||||    
T  21216772 actcattaggatttctaagatataaacttgaaaataaatcctaggtgttttgcgttatttgatttgacagagtaatggcacaggaaaatagtagagtctt 21216673  T
Q  104 gttgcttcttcttcaagtcttcagctccttttat------tgttgacagag-ttttggagaagagtgccatcacaaatagagtcgttgagaagcttttat 196  Q
     || |||||||||   ||||||| ||||||||||      || |   ||||   ||||| ||| || ||| |||||||||||||||| ||||||||  ||    
T  21216672 attacttcttctttgggtcttcaactccttttatatgcaatgatttaagagacgttggataagcgttccagcacaaatagagtcgttaagaagcttcaat 21216573  T
Q  197 caagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttg 260  Q
    ||||||  || ||||||| |||| |||| |||||||||||| ||||||||||| ||||| ||||    
T  21216572 caagaacactggccctttgcctgatatgaataattccgttgaaaagtcctttgaatttcatttg 21216509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 28760256 - 28760460
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcct-aagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagt 100  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||| |||| ||||||||||| || |||||| ||||||||||||| || |||    
T  28760256 tcactccttaagatttctaagatataaacttgaaaaataatccttaagtgttttgcgctatttgatttgacaaagttttcgcacagaaaaatatcagagt 28760355  T
Q  101 cttgttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagctt 192  Q
    ||||||| ||||||||||||||||||| | ||||||| |        |||| |||  || ||||||||||| |||| ||||||||||| |||||||||||    
T  28760356 cttgttgtttcttcttcaagtcttcagttgcttttataggcaatgatttgagagacgtt-ggagaagagtgtcatcgcaaatagagtcattgagaagctt 28760454  T
Q  193 ttatca 198  Q
    | ||||    
T  28760455 tgatca 28760460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 25570120 - 25570192
Alignment:
Q  352 cttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25570120 cttcatgataagtaaattatgcacacttgaacatatgttagtaatccaattgttcttcaatactttgttatca 25570192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 9824660 - 9824717
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9824660 attctgcacacttgaacatatgttagtatttcaattgttcttcaatactttgttatca 9824717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 19569951 - 19569699
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtctt 103  Q
    |||||||||||||| ||||||||| ||||||||||| |||| ||||||| |||  ||||||||||| ||||||  || ||||| ||||||| | ||||||    
T  19569951 actccttaggatttttaagatatagacttgaaaatatatcccaagtgttttgcactatttgatttgacagagtaatgacacagtaaaatagtagagtctt 19569852  T
Q  104 gttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagctttta 195  Q
    ||| |||||| |||| ||||||| || ||| ||| |        |||| |||   ||| ||||||||| ||    ||||||||| ||||||||||||| |    
T  19569851 gttacttctttttcaggtcttcaacttcttatataggtagtgatttgagaga-cgttgaagaagagtgtcagtgaaaatagagttgttgagaagctttga 19569753  T
Q  196 tcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttg 249  Q
    |||| |||| | ||||||| |  | ||||||||||| |||||||||||||||||    
T  19569752 tcaataatgttggccctttgctagatatggataatttcgttggaaagtcctttg 19569699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 24885565 - 24885449
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |||| | |  |||||||||||  ||| |||||| ||||||||||| || ||||    
T  24885565 tcacttcttaggatttctaagatataaacttgaaaataaatcccaactgtttttctctatttgatttgatagaattttggtacagaaaaatatcagagtc 24885466  T
Q  102 ttgttgcttcttcttca 118  Q
    ||||| ||| |||||||    
T  24885465 ttgttacttattcttca 24885449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 24163465 - 24163575
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtg-ttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagt 100  Q
    |||||||||||||||||||| ||||||||||||||   ||||||||||| || |||  |||||| |||| ||||||||| ||||||||||||| || |||    
T  24163465 tcactccttaggatttctaatatataaacttgaaa--taatcctaagtgtttttgcactatttgttttgacagagttttcgcacagaaaaataacatagt 24163562  T
Q  101 cttgttgcttctt 113  Q
    |||||||||||||    
T  24163563 cttgttgcttctt 24163575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 24884967 - 24884895
Alignment:
Q  352 cttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||| ||| ||||  |||||||||||||||||||||||||  ||||| ||||| |||||||||||||||    
T  24884967 cttcatgataaggaaatcatgcacacttgaacatatgttagtatatcaattattctttaatactttgttatca 24884895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 21215396 - 21215341
Alignment:
Q  369 tctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||    
T  21215396 tctgcacacttgaacatatgttcgtattctaattactcttcaatactttgttatca 21215341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 21216137 - 21216101
Alignment:
Q  369 tctgcacacttgaacatatgttagtattccaattgtt 405  Q
    |||||||||||||||||||||||||||||||||||||    
T  21216137 tctgcacacttgaacatatgttagtattccaattgtt 21216101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 23110088 - 23110136
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaatcctaagtgtt 53  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  23110088 actccttaggatttctacgatacgaacttgaaaataaatcctaagtgtt 23110136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 24492145 - 24492093
Alignment:
Q  373 cacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    |||||||||||| || ||||||| |||||||||||||||||||||||||||||    
T  24492145 cacacttgaacaaatattagtatatccaattgttcttcaatactttgttatca 24492093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 28760859 - 28760898
Alignment:
Q  385 tatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  28760859 tatgttagtataccaattgttcttcaatactttgttatca 28760898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 24163629 - 24163739
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    |||||||| |||| ||||||||||||||||||||||||| ||  |||| |||   |  || ||| |||| | |||||||| |||||||||||| |||||     
T  24163629 ttggagaaaagtgtcatcacaaatagagtcgttgagaagattcaatcacgaacattgaccatttgcctgatttggataatcccgttggaaagtactttga 24163728  T
Q  251 atttcctttgc 261  Q
    || ||||||||    
T  24163729 atctcctttgc 24163739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 9824173 - 9824210
Alignment:
Q  155 agaagagtgccatcacaaatagagtcgttgagaagctt 192  Q
    |||||||||||| | |||||||||||||||||||||||    
T  9824173 agaagagtgccagcgcaaatagagtcgttgagaagctt 9824210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 16790953 - 16791004
Alignment:
Q  375 cacttgaacatat--gttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||  ||||||||| |||||||| |||||||||||| |||||    
T  16790953 cacttgaacatataagttagtatttcaattgtttttcaatactttgctatca 16791004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 18304227 - 18304267
Alignment:
Q  77 tttggcacagaaaaatagcaaagtcttgttgcttcttcttc 117  Q
    ||||||| |||||||||||| ||||||||| ||||||||||    
T  18304227 tttggcatagaaaaatagcatagtcttgttacttcttcttc 18304267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 7e-38; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 8685425 - 8685689
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||||  ||||||| |||||||||| ||||||    
T  8685425 actccttaggatttctaagatataaacttgaaaataaatcctaagtgttttgcattatttgatttgatagagtaatggcacaaaaaaatagcagagtctt 8685524  T
Q  104 gttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagctttta 195  Q
    ||| ||||||||||  ||||||| |||| ||||| |        |||| |||   ||||||||| || ||  || ||||||| ||||| ||||||||  |    
T  8685525 gttacttcttcttcgggtcttcaactccctttataggcagttatttgagaga-cgttggagaagcgttccgacaaaaatagaatcgttaagaagcttcaa 8685623  T
Q  196 tcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
    ||||||| | |  |||||| | || |||||||||||||||||| || ||||||| |||||||||||    
T  8685624 tcaagaaagttgtccctttgcatgatatggataattccgttggtaaatcctttgaatttcctttgc 8685689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 16197810 - 16197675
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    ||||||||||||||||||||||||||||| |||||||||||  ||| || | |||| ||||||||||| |||||||||| ||||||||||||||| ||||    
T  16197810 tcactccttaggatttctaagatataaacctgaaaataaattgtaactgctttgcgctatttgatttgacagagttttgacacagaaaaatagcagagtc 16197711  T
Q  102 ttgttgcttcttcttcaagtcttcagctccttttat 137  Q
    ||||||||||||||| | ||||||| || |||||||    
T  16197710 ttgttgcttcttctttaggtcttcatcttcttttat 16197675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 367 - 424
Target Start/End: Complemental strand, 26654408 - 26654351
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26654408 attctgcacacttgaacatatgttagtcttccaattgttcttcaatactttgttatca 26654351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 26653341 - 26653233
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    |||||||| ||| | ||| |||||||||||||||||||| ||| |||||||| | | ||||||| |||| ||||||||||||||||| | |||||||||     
T  26653341 ttggagaaaagttctatcgcaaatagagtcgttgagaagatttaatcaagaacgttggcccttttcctgatatggataattccgttgaatagtcctttga 26653242  T
Q  251 atttccttt 259  Q
    |||||||||    
T  26653241 atttccttt 26653233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 26652861 - 26652808
Alignment:
Q  371 tgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26652861 tgcacacttaaacatatgttagtattccaattgttcttcaatactttgttatca 26652808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 151 - 282
Target Start/End: Complemental strand, 16152402 - 16152270
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    ||||| |||||||||| | |||||| | | |||||||||||   |||||||||| |  ||||||  ||| |||||||||||||||||||||||||||||     
T  16152402 ttggacaagagtgccagcgcaaataaatttgttgagaagctccaatcaagaatgttgcccctttttctgatatggataattccgttggaaagtcctttga 16152303  T
Q  251 atttcctttgc-ataataagaattatatgttgc 282  Q
    |||||||||||   || ||||||||||||||||    
T  16152302 atttcctttgctgaaagaagaattatatgttgc 16152270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 25348452 - 25348524
Alignment:
Q  352 cttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||| | ||| || ||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  25348452 cttcatgatacgtagatcctgcacacttgaacatatgttagtatatcaattgttcttcaatactttgttatca 25348524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 26653705 - 26653575
Alignment:
Q  5 actccttaggatttctaagatataaacttga--aaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    |||| ||||||||||||||||||||||||||  | | ||||| |||||||| |||| |||| |||||| ||||||  || ||||| ||||||||| ||||    
T  26653705 actctttaggatttctaagatataaacttgaatacaaaaatcataagtgttttgcgctattagatttgacagagtaatgacacagtaaaatagcagagtc 26653606  T
Q  102 ttgttgcttcttcttcaagtcttcagctcctt 133  Q
    |||||   ||||||| ||||||||||||||||    
T  26653605 ttgtt-aatcttctttaagtcttcagctcctt 26653575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 8686057 - 8686112
Alignment:
Q  369 tctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  8686057 tctgcacatttgaacatatgttagtattccaattgttcttcgatactttattatca 8686112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 16197201 - 16197130
Alignment:
Q  352 cttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||| ||||| || |||||||||||||||||| |||||||  ||||||||||||||||| |||||||||    
T  16197201 cttcatgataagtagat-ctgcacacttgaacatatattagtatatcaattgttcttcaataccttgttatca 16197130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 22311280 - 22311225
Alignment:
Q  370 ctgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||    
T  22311280 ctgcacacttgaacaaatattagtatatccaattgttcttcaatactttgttatca 22311225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 24216381 - 24216431
Alignment:
Q  374 acacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  24216381 acacttgaacatatgttcgtaatccaattgttcttcaatactctgttatca 24216431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 24764199 - 24764145
Alignment:
Q  371 tgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||| || ||||||| ||||| |||||||||||||||||||||||    
T  24764199 tgcacacttgaacaaatattagtatatccaagtgttcttcaatactttgttatca 24764145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 16151924 - 16151887
Alignment:
Q  387 tgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  16151924 tgttagtattccaattgttcttcaatactctgttatca 16151887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 18848733 - 18848790
Alignment:
Q  368 ttctgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    ||||| |||||||||||||| |||  || |||||||||||||||||||||||||||||    
T  18848733 ttctgtacacttgaacatatattatcatatccaattgttcttcaatactttgttatca 18848790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 25916275 - 25916223
Alignment:
Q  371 tgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttat 422  Q
    ||||||||| |||| || ||||||| |||||||||||||||||||||||||||    
T  25916275 tgcacacttaaacaaatattagtatatccaattgttcttcaatactttgttat 25916223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 16152521 - 16152442
Alignment:
Q  40 aaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtcttgttgcttcttcttca 118  Q
    |||||||||||||| |||   |||| ||||| |||||| ||| || |||||||||||| ||||||||| |||||||||||    
T  16152521 aaatcctaagtgttttgctcaatttaatttgacagagtattgacatagaaaaatagcagagtcttgtttcttcttcttca 16152442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 24215920 - 24216030
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    |||||||||||| ||| | |||||||| ||||| ||||||||  ||||  || | | |||||||  ||| ||||||||||  ||||||||||| |||||     
T  24215920 ttggagaagagttccagcgcaaatagattcgttaagaagcttcaatcacaaacgatggccctttgactgatatggataatctcgttggaaagtactttga 24216019  T
Q  251 atttcctttgc 261  Q
    |||||| ||||    
T  24216020 atttccgttgc 24216030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 22132437 - 22132328
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    ||||||||||| | || |  ||||| ||||||||||||||||  |||||||| | | | ||||| | || |||| ||||||| |||| | |||||||||     
T  22132437 ttggagaagagagtcagcctaaatatagtcgttgagaagcttcaatcaagaacgttggtcctttgcttgatatgaataattcagttgaatagtcctttga 22132338  T
Q  251 atttcctttg 260  Q
    ||||||||||    
T  22132337 atttcctttg 22132328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 17417155 - 17417103
Alignment:
Q  373 cacacttgaacatatgttagtatt-ccaattgttcttcaatactttgttatca 424  Q
    |||||||||||| || ||||| |  ||||||||||||||||||||||||||||    
T  17417155 cacacttgaacaaatattagtttgaccaattgttcttcaatactttgttatca 17417103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 19565073 - 19565121
Alignment:
Q  370 ctgcacacttgaacatatgttagtat-tccaattgttcttcaatacttt 417  Q
    |||||||||| |||| || ||||||| ||||||||||||||||||||||    
T  19565073 ctgcacactttaacaaatattagtatgtccaattgttcttcaatacttt 19565121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 21547965 - 21547913
Alignment:
Q  373 cacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    |||||||||| | || ||||||| ||||||||||||||||||||||| |||||    
T  21547965 cacacttgaaaaaatattagtatatccaattgttcttcaatactttggtatca 21547913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 21318216 - 21318484
Alignment:
Q  3 tcactccttaggatttctaagatat-aaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagt 100  Q
    |||||||||||||||| |||||||| |||||||||||  ||||||||||||| |||| |||||||| || ||||||||||||||||||||||||   |||    
T  21318216 tcactccttaggatttttaagatataaaacttgaaaaataatcctaagtgttttgcgctatttgatatgacagagttttggcacagaaaaatagtggagt 21318315  T
Q  101 -cttgttgcttcttcttcaagtcttcagctccttttat-tg-------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagct 191  Q
      || |  ||| |||||||||| ||||||||||||||| ||       |||| |||  |||||||||||||| |  | |||||| |||||||||||||||    
T  21318316 gtttatcacttattcttcaagttttcagctccttttatatgcagtgatttgagaga-ctttggagaagagtgtcggcgcaaatatagtcgttgagaagct 21318414  T
Q  192 tttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
    || ||||||||   | ||||||| |||| |||| ||||||| |||||||||||||||| |||||||||||    
T  21318415 ttgatcaagaacattggccctttgcctgatatgtataattctgttggaaagtcctttgaatttcctttgc 21318484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 13178211 - 13178076
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaa--ataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    |||||||||||||||||||||||||||||||||    |||| ||||||||| |||| ||||||||||| | ||| ||||||| | ||||||| || ||||    
T  13178211 actccttaggatttctaagatataaacttgaaagctaaaattctaagtgttttgcgctatttgatttgacggagatttggcatataaaaataacatagtc 13178112  T
Q  102 ttgttgcttcttcttcaagtcttcagctccttttat 137  Q
    |||||  |||| ||||| ||||||| ||||||||||    
T  13178111 ttgttatttctgcttcaggtcttcaactccttttat 13178076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 13341109 - 13340974
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaa--ataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    |||||||||||||||||||||||||||||||||    |||| ||||||||| |||| ||||||||||| | ||| ||||||| | ||||||| || ||||    
T  13341109 actccttaggatttctaagatataaacttgaaagctaaaattctaagtgttttgcgctatttgatttgacggagatttggcatataaaaataacatagtc 13341010  T
Q  102 ttgttgcttcttcttcaagtcttcagctccttttat 137  Q
    |||||  |||| ||||| ||||||| ||||||||||    
T  13341009 ttgttatttctgcttcaggtcttcaactccttttat 13340974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 261
Target Start/End: Original strand, 9323368 - 9323634
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaat--aaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    ||||||||||||||||||||||| || || |||    |||||||| ||||| |||| ||||||||||| || |||  || ||||||||||||| ||||||    
T  9323368 actccttaggatttctaagatatgaatttcaaagctaaaatcctatgtgttttgcgctatttgatttgacaaagtaatgacacagaaaaatagaaaagtc 9323467  T
Q  102 ttgttgcttcttcttcaagtcttcagctccttttattgtt--------gacagagttttggagaagagtgccatcacaaatagagtcgttgagaagcttt 193  Q
    || || ||||||||||| || ||| ||||||| ||| | |        || |||  || |||||||||||||| | |||||||||||||||||||||||     
T  9323468 ttattacttcttcttcaggtattcggctccttatataggtagtgaaatgagagacatt-ggagaagagtgccaacgcaaatagagtcgttgagaagcttc 9323566  T
Q  194 tatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
     ||||||||   | || |||| |||| ||||||||||||||||| |||||  |||| ||||| |||||    
T  9323567 aatcaagaacattggcgctttgcctgatatggataattccgttgaaaagtattttgaatttcttttgc 9323634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 15331006 - 15330957
Alignment:
Q  375 cacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15331006 cacttgaacatatgttagtattccaattgttcttcaatactttgttatca 15330957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 9323970 - 9324020
Alignment:
Q  374 acacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9323970 acacttgaacgtatgttagtattccaattgttcttcaatactttgttatca 9324020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 11360545 - 11360491
Alignment:
Q  370 ctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11360545 ctgcagacttgaacatatgttagtattccaattgttcttcaatactttgtcatca 11360491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 13340479 - 13340429
Alignment:
Q  374 acacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13340479 acacttgaacgtatgttagtattccaattgttcttcaatactttgttatca 13340429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 21318761 - 21318814
Alignment:
Q  371 tgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  21318761 tgcacacttgaacatttgttagtattccaattgttcttcaatactttattatca 21318814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 11829704 - 11829599
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    |||||||||||| ||| |||||||||  ||||||||||| ||  |||||||||| | ||||||| |||  ||||||||||||||||| ||||||||||      
T  11829704 ttggagaagagttccagcacaaatag--tcgttgagaagtttcaatcaagaatgttggccctttgccttatatggataattccgttgaaaagtcctttaa 11829607  T
Q  251 atttcctt 258  Q
    ||||||||    
T  11829606 atttcctt 11829599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 13177580 - 13177529
Alignment:
Q  373 cacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  13177580 cacacttgaacgtatgttagtattccaattgttcttcaatacttttttatca 13177529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 15331650 - 15331525
Alignment:
Q  10 ttaggatttctaagatataaacttgaaaat--aaatcctaagtgttctgcgttatttgattt-gcagagttttggcacagaaaaatagcaaagtcttgtt 106  Q
    ||||||||||||||||||||||||||| ||  |||||||||||| | |||||| || ||||| |||||||  | |||||| ||||||||| ||||||| |    
T  15331650 ttaggatttctaagatataaacttgaatatgaaaatcctaagtggtttgcgttgttagatttggcagagtaattgcacagtaaaatagcagagtcttg-t 15331552  T
Q  107 gcttcttcttcaagtcttcagctcctt 133  Q
       |||||||||||| |||||||||||    
T  15331551 caatcttcttcaagtattcagctcctt 15331525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 16198728 - 16198672
Alignment:
Q  370 ctgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatcaa 425  Q
    ||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||||    
T  16198728 ctgcacacttgaacaaatattagtatatccaattattcttcaatactttgttatcaa 16198672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 14426966 - 14426911
Alignment:
Q  370 ctgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||| |||| || ||||||||||||| |||||||||||||||    
T  14426966 ctgcacacttgaacatatattagcatatccaattgttctttaatactttgttatca 14426911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 20311422 - 20311368
Alignment:
Q  371 tgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||| |||| || ||||||||||||| |||||||||||||||    
T  20311422 tgcacacttgaacatatattagcatatccaattgttcttaaatactttgttatca 20311368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 21528269 - 21528163
Alignment:
Q  154 gagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatt 253  Q
    |||||||||| || | ||||||||||||||||||| |||  |||||||| |    |||||| |||| |||||||||||| |||| | ||| ||||| |||    
T  21528269 gagaagagtgtcagcgcaaatagagtcgttgagaatcttcaatcaagaacgtcgaccctttgcctgatatggataattctgttgaatagttctttgaatt 21528170  T
Q  254 tcctttg 260  Q
    |||||||    
T  21528169 tcctttg 21528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 13178036 - 13177947
Alignment:
Q  170 caaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttccttt 259  Q
    |||||||||||||||   | |||| |||||||| | |  | |||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  13178036 caaatagagtcgttggataactttgatcaagaaagttgactctttgcctgatatggataattccgttggaaaatcctttgaatttccttt 13177947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 44755363 - 44755416
Alignment:
Q  371 tgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||| | |||||||  ||||| |||||||||||    
T  44755363 tgcacacttgaacatatgttagtatacaaattgtttctcaatgctttgttatca 44755416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 11829855 - 11829824
Alignment:
Q  5 actccttaggatttctaagatataaacttgaa 36  Q
    ||||||||||||||||||||||||||||||||    
T  11829855 actccttaggatttctaagatataaacttgaa 11829824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 13340936 - 13340845
Alignment:
Q  170 caaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
    |||||||||||||||   | |||| |||||||| | |  | |||| |||| ||||||||||||||||||||| || |||| |||||||||||    
T  13340936 caaatagagtcgttggataactttgatcaagaaagttgactctttgcctgatatggataattccgttggaaaatcttttgaatttcctttgc 13340845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 38076085 - 38076035
Alignment:
Q  371 tgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgtt 420  Q
    ||||||||||| ||||| ||||||| || ||||||||||||||||||||||    
T  38076085 tgcacacttgagcatatattagtatatctaattgttcttcaatactttgtt 38076035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 3646912 - 3646949
Alignment:
Q  98 agtcttgttgcttcttcttcaagtcttcagctcctttt 135  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  3646912 agtcttgttgcttcttcttcatgtcttcaactcctttt 3646949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 13291420 - 13291367
Alignment:
Q  370 ctgcacacttgaacatatgttagtat-tccaattgttcttcaatactttgttat 422  Q
    |||||||||||||||||| |||  || || ||||||||||||||||||||||||    
T  13291420 ctgcacacttgaacatatattaacatatctaattgttcttcaatactttgttat 13291367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 15331451 - 15331399
Alignment:
Q  209 ccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
    |||||| |||| ||||||||||||||||| | ||||||||  |||||||||||    
T  15331451 ccctttgcctgatatggataattccgttgaatagtcctttaaatttcctttgc 15331399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 22317045 - 22316914
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaaa-taaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtct 102  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||| || || | ||||||||||| |||||| ||| ||||||||||||||| |||||    
T  22317045 actccttaggatttctaagatataaacttgaaaaataaaacctaagtattttgtgctatttgatttgacagagtattgacacagaaaaatagcagagtct 22316946  T
Q  103 tgttgcttcttcttcaagtcttcagctccttt 134  Q
    | || ||||||||||| |||||||||||||||    
T  22316945 ttttacttcttcttcatgtcttcagctccttt 22316914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 22316424 - 22316369
Alignment:
Q  369 tctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22316424 tctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 22316369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 367 - 424
Target Start/End: Complemental strand, 16321917 - 16321860
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16321917 attctgcacacttgaacatatgttagtattcaaattgttcttcaatactttgttatca 16321860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 8912056 - 8912113
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8912056 attctgcagacttgaacatatgttagtattccaattgttcttcaatgctttgttatca 8912113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 424
Target Start/End: Complemental strand, 12333809 - 12333752
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  12333809 attctgctcacttgaacatatgttagtaatccaattgttcttcaatattttgttatca 12333752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 5842987 - 5842896
Alignment:
Q  170 caaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
    |||||||||||||||| ||| ||| |||||||| | |||||||||  ||||||||||||| ||| ||| |||||| |||| |||||||||||    
T  5842987 caaatagagtcgttgataagttttgatcaagaacgttagccctttgactggtatggataaatccattgaaaagtcttttgaatttcctttgc 5842896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 346 - 424
Target Start/End: Complemental strand, 5842558 - 5842480
Alignment:
Q  346 tccttgcttcatgacaagtaaattctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||| |||||||| |  || |||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||    
T  5842558 tcctttcttcatgatagatagattctgcacacttgaacatatgttagtatttctattatttttcaatactttgttatca 5842480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 22222402 - 22222350
Alignment:
Q  373 cacacttgaacatatgttagtat-tccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  22222402 cacacttgaacatatattagtatgtccacttgttcttcaatactttgttatca 22222350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 13570796 - 13570736
Alignment:
Q  9 cttaggatttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg 70  Q
    |||||| ||||||||||||| | |||||||||||||||| ||||| |||| |||| ||||||    
T  13570796 cttagggtttctaagatatata-ttgaaaataaatcctatgtgttttgcgctattagatttg 13570736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 424
Target Start/End: Original strand, 20245766 - 20245794
Alignment:
Q  396 tccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||||||||||||||    
T  20245766 tccaattgttcttcaatactttgttatca 20245794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 79119 - 79237
Alignment:
Q  15 atttctaagatataaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtcttgttgcttctt 113  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||| | | |||||||||| |||    
T  79119 atttctaagatataaacttaaaaat-aatcctaagtgttttgcgctatttgatttgacagatttttggcacagaaaaatag-agaatcttgttgctactt 79216  T
Q  114 cttcaagtcttcagctccttt 134  Q
    ||||| ||||||| |||||||    
T  79217 cttcaggtcttcatctccttt 79237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 79625 - 79679
Alignment:
Q  371 tgcacacttgaacatatgt-tagtattccaattgttcttcaatactttgttatca 424  Q
    |||| |||||||||||||| ||||||||||||| |||||||||| ||| ||||||    
T  79625 tgcatacttgaacatatgtatagtattccaattattcttcaataatttattatca 79679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 128777 - 128912
Alignment:
Q  5 actccttaggatttctaagatataaacttgaaa--ataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtc 101  Q
    |||||||||||||||||||||||||||||||||    |||| ||||||||| |||| ||||||||||| | ||| ||||||| | ||||||| || ||||    
T  128777 actccttaggatttctaagatataaacttgaaagctaaaattctaagtgttttgcgctatttgatttgacggagatttggcatataaaaataacatagtc 128876  T
Q  102 ttgttgcttcttcttcaagtcttcagctccttttat 137  Q
    |||||  |||| ||||| ||||||| ||||||||||    
T  128877 ttgttatttctgcttcaggtcttcaactccttttat 128912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 424
Target Start/End: Original strand, 129408 - 129459
Alignment:
Q  373 cacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  129408 cacacttgaacgtatgttagtattccaattgttcttcaatacttttttatca 129459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 128952 - 129041
Alignment:
Q  170 caaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttccttt 259  Q
    |||||||||||||||   | |||| |||||||| | |  | |||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  128952 caaatagagtcgttggataactttgatcaagaaagttgactctttgcctgatatggataattccgttggaaaatcctttgaatttccttt 129041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 11869 - 12122
Alignment:
Q  3 tcactccttaggatttctaagatataaacttgaaaataaatcctaagtgttct-gcgttatttgatttgcagagt-tttggcacagaaaaatagcaaagt 100  Q
    ||||||||||||||||| || |||| ||||||||||  ||||||||| ||| | | | |||||||||||   | | |||||||||||||| ||||| |||    
T  11869 tcactccttaggatttcaaaaatattaacttgaaaaataatcctaagagtttttgtgctatttgatttgacaattctttggcacagaaaactagcagagt 11968  T
Q  101 cttgttgcttcttcttcaagtcttcagctccttttattg--------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagctt 192  Q
    ||| |||||||||||||| || |||| |||||||||| |        |||| |||   ||||||||||||| ||    |||||||||||| |||||||||    
T  11969 cttattgcttcttcttcaggtattcatctccttttataggtagtgatttgagaga-cgttggagaagagtgtcagtgtaaatagagtcgtggagaagctt 12067  T
Q  193 ttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctt 247  Q
    | |||| ||||| ||||||||| |||| || ||||| |||| ||||||| |||||    
T  12068 tgatcacgaatgttagccctttgcctgatacggatagttcccttggaaattcctt 12122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 7748 - 7799
Alignment:
Q  371 tgcacacttgaacatatgttagtattccaattgttcttcaatactttgttat 422  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  7748 tgcacacttgaacatatgttagtataccaattgtttttcaatactttgttat 7799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 424
Target Start/End: Original strand, 12474 - 12520
Alignment:
Q  378 ttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  12474 ttgaacatatgttagtataccaattgttcttcaatactttgttatca 12520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 26876 - 26933
Alignment:
Q  367 attctgcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  26876 attctgcacactttaacatatgttagtattccaattgttcttcgatactttgttatca 26933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 26227 - 26486
Alignment:
Q  10 ttaggatttctaagatataaacttgaaaat--aaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtcttgtt 106  Q
    |||||||||||||||||||||||||||     |||||||||||||| || | ||||||||||| || |||  || ||||| ||||| ||| |||||||||    
T  26227 ttaggatttctaagatataaacttgaatgctaaaatcctaagtgttttgggctatttgatttgacatagtaatgacacagtaaaattgcagagtcttgtt 26326  T
Q  107 gcttcttcttcaagtcttcagctccttttat-tg-------ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagcttttatca 198  Q
      |||||||||| |||||||||||||| ||| ||       |||| || |  |||||||||||||| |    ||||||||||||| ||||||||  ||||    
T  26327 a-ttcttcttcaggtcttcagctccttatatatgcagtcatttgagag-gcgttggagaagagtgctagtgtaaatagagtcgttcagaagcttcaatca 26424  T
Q  199 agaatgctagccctttccctggtatggataattccgttggaaagtcctttggatttcctttg 260  Q
    |||| | | ||||||| |||| ||||||||||||  ||| | ||||||||| ||||||||||    
T  26425 agaacgttggccctttgcctgatatggataattctattgaatagtcctttgaatttcctttg 26486  T

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Target: scaffold0062 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 261
Target Start/End: Original strand, 2386 - 2627
Alignment:
Q  28 aaacttgaaaataaatcctaagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtcttgttgcttcttcttcaagtcttca 126  Q
    |||||||||||||||| ||||||||| | |  ||||||||||| ||||||  || ||||| |||||||||||||||||||  |||||||| | |||||||    
T  2386 aaacttgaaaataaattctaagtgtttttcactatttgatttgacagagtaatgacacagtaaaatagcaaagtcttgttatttcttctttaggtcttca 2485  T
Q  127 gctccttttat------tg--ttgacagagttttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccct 218  Q
     |||||| |||      ||  |||| |||   |||||||||||||||| |||||||||||||||| ||||| ||| || || || | | |||| || |||    
T  2486 actccttatataagcagtgatttgagaga-cgttggagaagagtgccagcacaaatagagtcgttaagaagatttgataaaaaacgatggcccattgcct 2584  T
Q  219 ggtatggataattccgttggaaagtcctttggatttcctttgc 261  Q
      ||||  |||||  |||||||||||||||| |||||||||||    
T  2585 aatatgattaattatgttggaaagtcctttgaatttcctttgc 2627  T

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Target: scaffold0711 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 1964 - 1837
Alignment:
Q  9 cttaggatttctaagatataaacttga--aaataaatcctaagtgttctgcgttatttgatttgc-agagttttggcacagaaaaatagcaaagtcttgt 105  Q
    |||||||| ||||||||||||||||||  ||  ||||| |||||||| || |||||||||||||  |||||  ||||| || ||||| ||||||||||||    
T  1964 cttaggatgtctaagatataaacttgagtaagaaaatcataagtgttttgtgttatttgatttgatagagtaatggcatagtaaaattgcaaagtcttgt 1865  T
Q  106 tgcttcttcttcaagtcttcagctcctt 133  Q
    | ||||| ||||| ||||||| ||||||    
T  1864 tacttctgcttcaggtcttcaactcctt 1837  T

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Target: scaffold0711; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 1358 - 1309
Alignment:
Q  369 tctgcacacttgaacatatgttagtattccaattgttcttcaatactttg 418  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  1358 tctgcacacttaaacatatgttagtattccaattgttctttaatactttg 1309  T

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Target: scaffold0520 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 7686 - 7635
Alignment:
Q  373 cacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  7686 cacacttgaacatatgttagtaatccaattgttcttgaatactttgttatca 7635  T

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Target: scaffold0068 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 57236 - 57138
Alignment:
Q  46 taagtgttctgcgttatttgatttg-cagagttttggcacagaaaaatagcaaagtcttgt------tgcttcttcttcaagtcttcagctccttttat 137  Q
    |||||||| || | ||||||||||| |||||||||||||||||||||||||| ||||||||      |  |||||||||| ||||||||||||||||||    
T  57236 taagtgttttgtgctatttgatttgacagagttttggcacagaaaaatagcatagtcttgttaattctttttcttcttcaggtcttcagctccttttat 57138  T

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Target: scaffold0068; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 56848 - 56796
Alignment:
Q  372 gcacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||| ||||| ||  |||||||||||||||||| |||||||||    
T  56848 gcacacttgaacatgtgttaataaaccaattgttcttcaataccttgttatca 56796  T

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Target: scaffold0068; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 249
Target Start/End: Complemental strand, 57117 - 57019
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttg 249  Q
    ||||||||||||| || || |||||||||||||| |||| ||  |||| ||||  |  |||||| |||| |||||||||| |||||| ||||| |||||    
T  57117 ttggagaagagtgtcagcaaaaatagagtcgttgggaagtttcgatcacgaatattgaccctttgcctgatatggataatcccgttgaaaagtactttg 57019  T

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Target: scaffold0653 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 424
Target Start/End: Original strand, 4699 - 4750
Alignment:
Q  373 cacacttgaacatatgttagtattccaattgttcttcaatactttgttatca 424  Q
    |||||||||||||||| || |||||||||| |||||||||| ||||||||||    
T  4699 cacacttgaacatatgctaatattccaattattcttcaatagtttgttatca 4750  T

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Target: scaffold0527 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 711 - 672
Alignment:
Q  98 agtcttgttgcttcttcttcaagtcttcagctccttttat 137  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  711 agtcttgttgcttctttttcaagtcttcagctccttttat 672  T

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Target: scaffold0527; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 8774 - 8735
Alignment:
Q  98 agtcttgttgcttcttcttcaagtcttcagctccttttat 137  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  8774 agtcttgttgcttctttttcaagtcttcagctccttttat 8735  T

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Target: scaffold0527; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 651 - 541
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    ||||||||||||  || | |||||||||||||| ||||||||  ||||  || | | ||||||| |||| |||||||||| | |||||||||| |||||     
T  651 ttggagaagagtttcagcccaaatagagtcgttaagaagcttcaatcacaaacgttggccctttgcctgatatggataatcctgttggaaagtactttga 552  T
Q  251 atttcctttgc 261  Q
    || ||||||||    
T  551 atctcctttgc 541  T

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Target: scaffold0527; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 8714 - 8604
Alignment:
Q  151 ttggagaagagtgccatcacaaatagagtcgttgagaagcttttatcaagaatgctagccctttccctggtatggataattccgttggaaagtcctttgg 250  Q
    ||||||||||||  || | |||||||||||||| ||||||||  ||||  || | | ||||||| |||| |||||||||| | |||||||||| |||||     
T  8714 ttggagaagagtttcagcccaaatagagtcgttaagaagcttcaatcacaaacgttggccctttgcctgatatggataatcctgttggaaagtactttga 8615  T
Q  251 atttcctttgc 261  Q
    || ||||||||    
T  8614 atctcctttgc 8604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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