View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17093_low_9 (Length: 526)
Name: NF17093_low_9
Description: NF17093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17093_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Original strand, 33556104 - 33556598
Alignment:
| Q |
7 |
gaagcataggagttgtgagttgtaagccatgagtaatggttaaatggaagctccatcacctacacatgcaaatcatttataataattaatcttttacaaa |
106 |
Q |
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| T |
33556104 |
gaagcataagagttgtgagttgtaagccatgagtaatggttaaatggaagctccatcacctacacatgcaaatcatttataataattaatcttttacaaa |
33556203 |
T |
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| Q |
107 |
gtttattttagcagctatagaacaaaaatgaaaaatgtatgatgaggactaaggacttttgaaataggacttgaagttcggactcgtgtacaccggcttt |
206 |
Q |
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| T |
33556204 |
gtttattttagcagctatagaacataaatgaaaaatgtatgatgaggactaaggacttttgaaataggacttgaagttcggactcgtgtacaccggcttt |
33556303 |
T |
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| Q |
207 |
gtgagttgcattccaggcactgcagccccgtaccacagtcattgacgtcacgggagcatgtttccccaatctgttatgaattgttgctcacatgaaacaa |
306 |
Q |
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| T |
33556304 |
gtgagttgcattccaggcactgcagccccgtaccacagtcattgacgtcgcgggagcatgtttccccaatctgttatgaattgttgctcacatgaaacaa |
33556403 |
T |
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| Q |
307 |
aaatatgtccttaaaatcttgatcatagattatttgatgaattgaagatgaagagaatatactaacactttgcaacttttgatattaagctttaagaatc |
406 |
Q |
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| T |
33556404 |
aaatatgtccttaaaatcttgatcatagattatttgatgaattgaagatgaagagaatatactaacactttgcaacttttgatattaagctttaagaatc |
33556503 |
T |
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| Q |
407 |
tcaaatttttagggttaggatgaagtgttaaaatttaattgtgaaatgtctagagtcatgatgcctttgtttatcacataaatttcttagtataa |
501 |
Q |
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| T |
33556504 |
tcaaatttttagggttaggatgaagtgttaaaatttaattgtgaaatgtctagagtcatgatgcctttgtttatcacataaatttcttagtataa |
33556598 |
T |
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