View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_high_11 (Length: 355)
Name: NF17094_high_11
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 30683999 - 30683871
Alignment:
| Q |
28 |
ggatccaattgtagcttctcctttatatgaaatcataggcgcaagatctacaacttctccaatagattgtaatattatctgccgacatgataaataacca |
127 |
Q |
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| T |
30683999 |
ggatccaattgtagcttctcctttatatgaaatcataggcgcaagatctacaacttctccaatagattgtaatattatctgccgacatgataaataacca |
30683900 |
T |
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| Q |
128 |
acagaacatcaatcccagatttcctcaag |
156 |
Q |
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| T |
30683899 |
acagaacatcaatcccagatttcctcaag |
30683871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 194 - 339
Target Start/End: Complemental strand, 30683833 - 30683688
Alignment:
| Q |
194 |
gattaattttctagtttaaatattctttgtatttagttagttacagcagtgaagtttaactctctctagctagtgtaggttaaacacatagtatatataa |
293 |
Q |
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| T |
30683833 |
gattaattttctagtttaaatattctttgcatttagttagttacagtagtgaagtttaactctctccagctagtgtaggttaaacacacagtatatataa |
30683734 |
T |
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| Q |
294 |
actgatgctacaaaatacataattcaaataccaattacaatattct |
339 |
Q |
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| T |
30683733 |
actgatgctacaaaacacataattcaaataccaattacaatattct |
30683688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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