View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17094_high_15 (Length: 289)

Name: NF17094_high_15
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17094_high_15
NF17094_high_15
[»] chr2 (1 HSPs)
chr2 (20-185)||(28682762-28682928)
[»] chr6 (2 HSPs)
chr6 (149-260)||(33904269-33904377)
chr6 (152-255)||(18094213-18094315)
[»] chr4 (1 HSPs)
chr4 (149-260)||(1865671-1865779)
[»] chr1 (4 HSPs)
chr1 (149-260)||(10919567-10919675)
chr1 (204-255)||(13505683-13505734)
chr1 (199-254)||(23817708-23817763)
chr1 (204-255)||(19139051-19139103)
[»] chr3 (1 HSPs)
chr3 (201-255)||(55058714-55058767)
[»] scaffold0006 (1 HSPs)
scaffold0006 (204-255)||(139112-139164)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 28682762 - 28682928
Alignment:
Q  20 caaagcaagcaacgcatatctatggataaatcttaccgaatcatcaccactactcttgcccaagttggatttgatgattcatatttaattaaattagggc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28682762 caaagcaagcaacgcatatctatggataaatcttaccgaatcatcaccactactcttgcccaagttggatttgatgattcatatttaattaaattagggc 28682861  T
Q  120 tagaagatgaacatattgaag-nnnnnnnntcatattattccagcttctttttggtgtggttccaat 185  Q
    |||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  28682862 tagaagatgaacatattgaagaaaaaaaaatcatattattccagcttctttttggtgtggttccaat 28682928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 33904377 - 33904269
Alignment:
Q  149 tcatattattccagcttctttttggtgtggttccaatagtgtgattcgatcattaattaaaaattagatttgatgcaacaaaattgcattgcccaaaatc 248  Q
    ||||||| ||||| |||| |||||||||| || ||| | ||  |||||||   |||||||||||||||||||||||||||||||||  |||||| | |||    
T  33904377 tcatatttttccaacttcattttggtgtgatttcaaaactgcaattcgat---taattaaaaattagatttgatgcaacaaaattgtcttgcccgagatc 33904281  T
Q  249 tggaaaagaaac 260  Q
    ||||||||||||    
T  33904280 tggaaaagaaac 33904269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 18094213 - 18094315
Alignment:
Q  152 tattattccagcttctttttggtgtggttccaatagtgtgattcgatcattaattaaaaattagatttgatgcaacaaaattgcattgcccaaaatctgg 251  Q
    |||||||||| | ||||||||||||| ||  || | ||||||||     |||||| |||||||||||||||||| ||||||||| |||||||| |||| |    
T  18094213 tattattccaacatctttttggtgtgattgtaaaattgtgattcttattttaattgaaaattagatttgatgcatcaaaattgc-ttgcccaagatctcg 18094311  T
Q  252 aaaa 255  Q
    ||||    
T  18094312 aaaa 18094315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 1865779 - 1865671
Alignment:
Q  149 tcatattattccagcttctttttggtgtggttccaatagtgtgattcgatcattaattaaaaattagatttgatgcaacaaaattgcattgcccaaaatc 248  Q
    ||||||| ||||| |||| |||||||||| || ||| | ||  |||||||   ||||||||||||||||||||||||||||||||   |||||| | |||    
T  1865779 tcatatttttccaacttcattttggtgtgatttcaaaactgcaattcgat---taattaaaaattagatttgatgcaacaaaattattttgcccgagatc 1865683  T
Q  249 tggaaaagaaac 260  Q
    ||||||||||||    
T  1865682 tggaaaagaaac 1865671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 10919675 - 10919567
Alignment:
Q  149 tcatattattccagcttctttttggtgtggttccaatagtgtgattcgatcattaattaaaaattagatttgatgcaacaaaattgcattgcccaaaatc 248  Q
    ||||||| ||||| |||| |||||||||| || ||| | ||  |||||||   |||||||||||||||||||||||||||||||||  |||||| | |||    
T  10919675 tcatatttttccaacttcattttggtgtgatttcaaaactgcaattcgat---taattaaaaattagatttgatgcaacaaaattgttttgcccgagatc 10919579  T
Q  249 tggaaaagaaac 260  Q
    || |||||||||    
T  10919578 tgaaaaagaaac 10919567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 13505683 - 13505734
Alignment:
Q  204 attaaaaattagatttgatgcaacaaaattgcattgcccaaaatctggaaaa 255  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||||||    
T  13505683 attaaaaataagatttgatgcatcaaaattgccttgcccaaaatctggaaaa 13505734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 23817763 - 23817708
Alignment:
Q  199 cattaattaaaaattagatttgatgcaacaaaattgcattgcccaaaatctggaaa 254  Q
    |||||||||||||||| |||||||||||||||||||  |||||| | |||||||||    
T  23817763 cattaattaaaaattaaatttgatgcaacaaaattgttttgcccgagatctggaaa 23817708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 19139103 - 19139051
Alignment:
Q  204 attaaaaattagatttgatgcaacaaaattgcattgccc-aaaatctggaaaa 255  Q
    ||||||||| |||||||||||| ||||||||| |||||| |||||||||||||    
T  19139103 attaaaaataagatttgatgcatcaaaattgccttgcccaaaaatctggaaaa 19139051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 55058767 - 55058714
Alignment:
Q  201 ttaattaaaaattagatttgatgcaacaaaattgcattgcccaaaatctggaaaa 255  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  55058767 ttaattaaaaattagatttgatgcatcaaaattgc-ttgcccaagatctggaaaa 55058714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 139112 - 139164
Alignment:
Q  204 attaaaaattagatttgatgcaacaaaattgcattgccc-aaaatctggaaaa 255  Q
    ||||||||| |||||||||||| ||||||||| |||||| |||||||||||||    
T  139112 attaaaaataagatttgatgcatcaaaattgccttgcccaaaaatctggaaaa 139164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University