View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_high_3 (Length: 556)
Name: NF17094_high_3
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 199 - 538
Target Start/End: Complemental strand, 25527819 - 25527480
Alignment:
| Q |
199 |
aacaagcagcaacggcggagccccagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccat |
298 |
Q |
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| T |
25527819 |
aacaagcagcaacggcggagcctcagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccat |
25527720 |
T |
|
| Q |
299 |
ggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagct |
398 |
Q |
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| T |
25527719 |
ggcccgccagtcggcgttctcagcaacgaatcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagct |
25527620 |
T |
|
| Q |
399 |
cttgatttgcacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattg |
498 |
Q |
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| T |
25527619 |
cttgatttgtacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattg |
25527520 |
T |
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| Q |
499 |
atgcggccctcgatgtttttcggaaaatgaaggctgatgc |
538 |
Q |
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| T |
25527519 |
atgcggccctcgatgtttttcggaaaatgaaggctgatgc |
25527480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 206 - 538
Target Start/End: Complemental strand, 25535841 - 25535509
Alignment:
| Q |
206 |
agcaacggcggagccccagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccatggcccgc |
305 |
Q |
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| T |
25535841 |
agcaacggcggagccccagcctcctcctgaagaactccacacgcgcgtcagatcgttgattcgctccggcaacctcgacgctgcctctgccatggcccgc |
25535742 |
T |
|
| Q |
306 |
cagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagctcttgatt |
405 |
Q |
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|||||| ||||||||||||| |||||||| || |||||||||||||| || ||||| | ||| |||||||| || |||||| |||| ||||||||||||| |
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| T |
25535741 |
cagtcgacgttctcagcaacaactcgtccaactgtgttcacctgcaatgctatcattgctgcaatgcaccgtgcgaaaagatacaatgaagctcttgatt |
25535642 |
T |
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| Q |
406 |
tgcacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattgatgcggc |
505 |
Q |
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|| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||| || ||||||||||||||| ||||||| ||||| |
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| T |
25535641 |
tgtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcttattgtgatgagggccgcattgacgcggc |
25535542 |
T |
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| Q |
506 |
cctcgatgtttttcggaaaatgaaggctgatgc |
538 |
Q |
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| T |
25535541 |
tctcgatgtttttcggaaaatgaaggccgatgc |
25535509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 263 - 538
Target Start/End: Original strand, 25514657 - 25514932
Alignment:
| Q |
263 |
gattcgctccggcaacctcgacgctgcctctgccatggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatc |
362 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514657 |
gattcgctccggcaacctcaacgctgcctctgccatggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatc |
25514756 |
T |
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| Q |
363 |
ggtgccatgcaccgcgcaaaaagacacaacgaagctcttgatttgcacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataact |
462 |
Q |
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|||||||||| || |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||| |
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| T |
25514757 |
ggtgccatgctccacgcaaaaagacacaaccaagctcttgatttgtacgagttcttctttaacttgtttaaaattgttcctaacattgtctctcataact |
25514856 |
T |
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| Q |
463 |
ttatgatcaacgcatattgtgatgagggctgcattgatgcggccctcgatgtttttcggaaaatgaaggctgatgc |
538 |
Q |
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| T |
25514857 |
ttgttatcaatgcctattgtgatgagggccgcattgacgcggctctcgatgtttttcggaaaatgaaggccgatgc |
25514932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 25528000 - 25527879
Alignment:
| Q |
18 |
aattctgctgggggtagtatatataagaagaaagatgttagaagaattcatttcattttcatttcaaattagaaagtacgaaattttagggtttcaaact |
117 |
Q |
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| T |
25528000 |
aattctgctggtggtagtatatataagaagaaagatgttagaagaattcatttcattttcatttcaaaatagaaagtacgaaattttagggtttcaaact |
25527901 |
T |
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| Q |
118 |
caacaatgtcactctgtcgcca |
139 |
Q |
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||||||||||||||| |||||| |
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| T |
25527900 |
caacaatgtcactctttcgcca |
25527879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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