View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_high_8 (Length: 407)
Name: NF17094_high_8
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 199 - 351
Target Start/End: Original strand, 9073239 - 9073385
Alignment:
| Q |
199 |
tagaaatgattagatttaaattctagcattattgtcataggtacagtgttgtgaatccatcgtgcatcgtgaaaattagcggtgctatagccaatttttg |
298 |
Q |
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| T |
9073239 |
tagaagtgattagatttaaattctagcattattgtcatag------tgttgtgaatccatcgcagatcgtgaaaaatagcggtgctatagccactttttg |
9073332 |
T |
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| Q |
299 |
gcaacaatttgagctaaattgtgaatcatggaacaaaagcaatttgttaaatt |
351 |
Q |
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| T |
9073333 |
gcaacattttgagctaaattgtgaatcgcagaacaaaagcgatttgttaaatt |
9073385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 9073110 - 9073213
Alignment:
| Q |
100 |
aaaagctttctcccaacataaataaaaaatttctattcttggttttgagacctctgaatggattcgtgtatcaggtgaatgaagcagattcaaggcacct |
199 |
Q |
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| T |
9073110 |
aaaagctttctcccaacataaatcacaaatt-cttttcttggttttgcaacatctgaatgaattcttgtatccggtgaatgaagcagattcaaggcacct |
9073208 |
T |
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| Q |
200 |
agaaa |
204 |
Q |
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| T |
9073209 |
agaaa |
9073213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 357 - 391
Target Start/End: Original strand, 9073420 - 9073454
Alignment:
| Q |
357 |
atagttatggaagactatagtaggaatagaaaagt |
391 |
Q |
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| T |
9073420 |
atagttatggaagactatagtaggaatagaaaagt |
9073454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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