View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_low_1 (Length: 887)
Name: NF17094_low_1
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 740; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 12 - 869
Target Start/End: Complemental strand, 32240630 - 32239772
Alignment:
| Q |
12 |
tgagatgaaatgaacacagcaagcaccattttatagagaaaaagggca--tatgaatttcatcttttatacacgcagtgtcagaatcaattaaaagaaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240630 |
tgagatgaaatgaacacagcaagcaccattttatagagaaaaagggcacatatgaatttcatcttttatacacgcagtgtcagaatcaattaaaagaaaa |
32240531 |
T |
|
| Q |
110 |
gaagggaaaaatcagtatctctgacccattgccaatagtttcaaacttcctgacacatggtaattaccttttgcagaaaccacatataccctaaaccaga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240530 |
gaagggaaaaatcagtatctctgacccattgccaatagtttcaaacttcctgacacatggtaattaccttttgcagaaaccacatataccctaaaccaga |
32240431 |
T |
|
| Q |
210 |
aatttccagcaaatgaagtaaaatttatagtgnnnnnnngacagataaaatgcattgtttaatcaaccaatccaagtgaaaattaaattaaaacaggggg |
309 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240430 |
aatttccagcaaatgaagtaaaatttatagtgaaaaaaagacagataaaatgcattgtttaatcaaccaatccaagtgaaaattaaattaaaacaggggg |
32240331 |
T |
|
| Q |
310 |
atttcagaatctctgaacaaaagacaaaattttcaaaccttctgacaaaagtttaacaccttttataggtgctctgtgagtggaaaccccagagagcacc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240330 |
gtttcagaatctctgaacaaaagacaaaattttcaaaccttctgacaaaagtttaacaccttttataggtgctctgtgagtggaaaccccagagagcacc |
32240231 |
T |
|
| Q |
410 |
gtagaagcctataaaccacacacnnnnnnnnnnnnnnnnnnnnnggaacaggcgtagcacccagctacatatcctcagaaaccagaaaacccacagagag |
509 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240230 |
gcagaagcctataaaccacacacaaaaaaaaagaaagtaaaaa-ggaacaggcgtagcacccagctacatatcctcagaaaccagaaaacccacagagag |
32240132 |
T |
|
| Q |
510 |
tagcagcagaagcgaagaagggcggatcccgctggtagtgtatggaacagttggatttgaagaggttctattgtaagattaatagatcacattagaatac |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240131 |
cagcagcagaagcgaagaagggcggatcccgctggtagtgtatggaacagttggatttgaagaggttctattgtaagattaatagatcacattagaatac |
32240032 |
T |
|
| Q |
610 |
aaaaagcctacatctctaacccattactttcaccataatatagcacacagaagtagcacctagctatgaaattggctgaaaacaaccagccactgcaaaa |
709 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240031 |
aaaaagcctgcatctctaacccattactttcaccataatatagcacacagaagtagcacctagctatgaaattggctgaaaacaaccagccactgcaaaa |
32239932 |
T |
|
| Q |
710 |
gaggtaaaaaacaaaatagaaatagcagatatagaacacagctacaaaacctccatgcacagaaaactgacagaaatcagcgccaaatgcggagaagggc |
809 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32239931 |
gaggtaaaaaacaaaatagaaatagcagatatagaacacagctacaaaacctccatgcacagaaaaccgacagaaatcagcgccaaatgcggagaagggc |
32239832 |
T |
|
| Q |
810 |
ggaactcgctggaagtgaatcgcacagtaaaattggaagcaaatgctttgtaagatgtat |
869 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239831 |
ggaactcgctggaagtgaatcgcacagtaaaattggaagcaaatgctttgtaagatgtat |
32239772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 8e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 738 - 869
Target Start/End: Complemental strand, 46470181 - 46470050
Alignment:
| Q |
738 |
atatagaacacagctacaaaacctccatgcacagaaaactgacagaaatcagcgccaaatgcggagaagggcggaactcgctggaagtgaatcgcacagt |
837 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||| ||||||||| | ||||| |||| ||||||| |
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| T |
46470181 |
atatagaacacagctacaaagcctccaagcacagaaaactgacataaatcagcgccaattgcggagaagagcggaactcaccggaagggaattgcacagt |
46470082 |
T |
|
| Q |
838 |
aaaattggaagcaaatgctttgtaagatgtat |
869 |
Q |
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||||| |||||||||| ||||||||||||||| |
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| T |
46470081 |
aaaatcggaagcaaatcctttgtaagatgtat |
46470050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 823
Target Start/End: Complemental strand, 33435811 - 33435757
Alignment:
| Q |
769 |
cagaaaactgacagaaatcagcgccaaatgcggagaagggcggaactcgctggaa |
823 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |
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| T |
33435811 |
cagaaaactgacagagttcagcgccaaacgcggagaagggcggatttcgctggaa |
33435757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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