View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17094_low_10 (Length: 367)
Name: NF17094_low_10
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 3 - 351
Target Start/End: Original strand, 11078951 - 11079299
Alignment:
| Q |
3 |
caccattaacgtttccatatctcaatatatatcatctatctcaaacaaatttccctctatcaacttccactatattccttcaatttcattcacttttact |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11078951 |
caccattaacgtttccacgtctcaatatatatcatctgtctcaaacaaatttccctctatcaacttccactatattccttcaatttcattcacttttact |
11079050 |
T |
|
| Q |
103 |
cttccacctcatttacaaaccctagaactctctcctcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcag |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11079051 |
cttccacctcatttacaaaccctagaactctctcctcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcag |
11079150 |
T |
|
| Q |
203 |
ttatgttggatttccttaactatagtgcttcacaagttaccaacaatcttgaaattccaacttacttttactacacctcaggagcttctcttctatgcct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11079151 |
ttatgttggatttccttaactatagtgcttcacaagttaccaacaatcttgaaattccaacttacttttactacacctcaggagcttctcttctatgcct |
11079250 |
T |
|
| Q |
303 |
ttttcttaactttccaacttttcacaaaaacgctacaatacctattaag |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11079251 |
ttttcttaactttccaacttttcacaaaaacgctacaatacctattaag |
11079299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 11018323 - 11018412
Alignment:
| Q |
138 |
tcgtagcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatag |
227 |
Q |
| |
|
|||||| |||||||||||| | ||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||| | |||||||| |
|
|
| T |
11018323 |
tcgtagtaaccaccatgttaaccatgttcttcaatccatttcaaaaacctcaaaccttaaaggtgttattttggatttcatgaactatag |
11018412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 284
Target Start/End: Original strand, 11001952 - 11002094
Alignment:
| Q |
142 |
agcaaccaccatgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatagtgcttcacaagtta |
241 |
Q |
| |
|
|||||||| |||||||| | ||||| | |||||| | |||||| ||||| | |||| |||| || |||||||| | ||||||||| |||||||| | |
|
|
| T |
11001952 |
agcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaaggtattatcttagatttcctcacctatagtgcctcacaagtca |
11002051 |
T |
|
| Q |
242 |
ccaacaatcttgaaattccaacttacttttactacacctcagg |
284 |
Q |
| |
|
||| ||| ||||||||||| |||||||||||||| || ||||| |
|
|
| T |
11002052 |
ccaccaaccttgaaattcctacttacttttactatacttcagg |
11002094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 351
Target Start/End: Original strand, 10967806 - 10968005
Alignment:
| Q |
152 |
atgttcatcatattcttcaatccattgcaaaaacctcaaaccttaaagcagttatgttggatttccttaactatagtgcttcacaagttaccaacaatct |
251 |
Q |
| |
|
||||||| ||||||| ||||||||| | |||||| ||||||| |||| |||||| || ||||| || | |||| ||| || |||| || | || || |
|
|
| T |
10967806 |
atgttcacaatattctccaatccatttccaaaaccacaaacctcaaaggagttatcttagattttctcacatataatgcctcgaaagtcactacaaagct |
10967905 |
T |
|
| Q |
252 |
tgaaattccaacttacttttactacacctcaggagcttctcttctatgcctttttcttaactttccaacttttcacaaaaacgctacaatacctattaag |
351 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||| ||| | || || |||||| ||| ||| ||||||| ||||| |||| ||||||| ||| |||||| |
|
|
| T |
10967906 |
tgaaattcccacttacttttacttcacttcaggtgctattgttttagcccttttccttcactatccaactattcaccaaaatgctacaaaacccattaag |
10968005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University