View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_low_12 (Length: 334)
Name: NF17094_low_12
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 8054316 - 8054007
Alignment:
| Q |
16 |
tttctttcacactattctctcaaccctaagttgttcgttgatttcttgcaaattcgaaggtcaagatttgttctttgctctttatgttcagatttaggag |
115 |
Q |
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| T |
8054316 |
tttctttcacactattctctcaaccctaagttgttcgttgatttcttgcaaattcgaaggtcaagatttgttctttgctctttatgttcagatttaggag |
8054217 |
T |
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| Q |
116 |
atgagaatgtgaaagtggtttgaagatgnnnnnnnnttaagctttaccattgaaggtgcaaaatatgataataataaaccttaatctagaaaacaaacaa |
215 |
Q |
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| T |
8054216 |
atgagaatgtgaaagtggtttgaagatgaaaaaaaattaagctttaccattaaaggtgcaaaatatgataataataaaccttaatctagaaaacaaacaa |
8054117 |
T |
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| Q |
216 |
aaaccactactacatatcaattaaaaggatgtaaaaaggtgaattcaagtgaccaatatgaacatggagtgaaatggaaagttgaattaatatgaaaaat |
315 |
Q |
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| T |
8054116 |
aaaccactactacatatcaattaaaaggatgtaaaaaggtgaattcaagtgaccaatatgaacatggagtgaaatggaaagttgaattaatatgaaaaat |
8054017 |
T |
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| Q |
316 |
tgagtataat |
325 |
Q |
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||||| |||| |
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| T |
8054016 |
tgagtgtaat |
8054007 |
T |
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