View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_low_15 (Length: 313)
Name: NF17094_low_15
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 136 - 303
Target Start/End: Original strand, 8705422 - 8705589
Alignment:
| Q |
136 |
aaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatttgagttt |
235 |
Q |
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| T |
8705422 |
aaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacaataaaggctttaaatgagtttatttgagttt |
8705521 |
T |
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| Q |
236 |
ttatttattcatttaaatgagtatgacaaaacatgagtttatccaggatttaataattttcctctctg |
303 |
Q |
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| T |
8705522 |
ttatttatttatttaaatgagtatgacaaaacatgagtttatccaggatttaataattttcctctctg |
8705589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 136 - 261
Target Start/End: Complemental strand, 14372305 - 14372181
Alignment:
| Q |
136 |
aaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatttgagttt |
235 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
14372305 |
aaaagcagccgggtgattcatgaatatcatgataccacctttgaagat-accaggtttgttttgttacaataaaggttttaaatgagtttatttgagtta |
14372207 |
T |
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| Q |
236 |
ttatttattcatttaaatgagtatga |
261 |
Q |
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| T |
14372206 |
ttatttatttatttaaatgagtatga |
14372181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 8691142 - 8691210
Alignment:
| Q |
136 |
aaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttaca |
204 |
Q |
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| T |
8691142 |
aaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttaca |
8691210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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