View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_low_17 (Length: 286)
Name: NF17094_low_17
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 6601718 - 6601458
Alignment:
| Q |
7 |
agagatgaaacaaccgcaagtgagagcgacgcaaataacttgccatcaccctttgaacctctagaaaacattactgccaagttcatttctaagggtcttg |
106 |
Q |
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| T |
6601718 |
agagatggaacaaccgcgagtgagagcgacgcaaataacttgccatcaccctttgaacctctagaaaacattactgccaagttcatttctaagggtcttg |
6601619 |
T |
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| Q |
107 |
aaaagaaagatgtagcagtgctctcaggtttgcttcccttgcaattatttgtaccaaaatatttatatataacatgtataacgtttatgattcgtgttcg |
206 |
Q |
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| T |
6601618 |
aaaagaaagatgtagcagtgctctcaggtttgcttcccttgcaattatttgtaccaaaatatt----tataacatgtataacgtttatgattcgtgttcg |
6601523 |
T |
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| Q |
207 |
aattatgttatcgtcattttcaaggctaacatatttctaactctaacgatcttaaggttctttct |
271 |
Q |
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| T |
6601522 |
aattatgttatcgtcattttcaaggctaacatatttctaactctaatgatcataaggtcctttct |
6601458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 6609253 - 6609101
Alignment:
| Q |
7 |
agagatgaaacaaccgcaagtgagagcgacgcaaataacttgccatcaccctttgaacctctagaaaacattactgccaagttcatttctaagggtcttg |
106 |
Q |
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| T |
6609253 |
agagatggcacaaccgcgagtgagagtgaggcaaataacttgccatcaccctttgaacctcttgaaaatattactgctaagttcatttccaaaggtcttg |
6609154 |
T |
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| Q |
107 |
aaaagaaagatgtagcagtgctctcaggtttgcttcccttgcaattatttgta |
159 |
Q |
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| T |
6609153 |
aaaagaaggatgtagcagtgctctcaggtttacttccttcacaattatttgta |
6609101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 44799831 - 44799889
Alignment:
| Q |
53 |
caccctttgaacctctagaaaacattact-gccaagttcatttctaagggtcttgaaaa |
110 |
Q |
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| T |
44799831 |
caccctttgaacctctagaaaacattactggccaagtacatttccaaaggtcttgaaaa |
44799889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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