View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_low_2 (Length: 571)
Name: NF17094_low_2
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 11 - 553
Target Start/End: Original strand, 31869639 - 31870177
Alignment:
| Q |
11 |
cacagaccagcaagatatttgagtgttaataattctcaaccacaaacatcgacttcaaaaaataannnnnnncgatgttttaaatggcagtgtaaaggtt |
110 |
Q |
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| T |
31869639 |
cacagaccagcaagatatttgagtgttaataattctcaaccacaaacatcgacttcaaaaaataatttttttcgatgttttaaatggcagtgtaaaggtt |
31869738 |
T |
|
| Q |
111 |
acactacatttgccagcagacctttagattgcatcatgtaatgcagctgcaaaggttttaaacagaagtctgtgactgagatctgggcagcaacatcagg |
210 |
Q |
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| T |
31869739 |
acactacatttgccagcagacttttagattgcatcatgtaatgcagctgcaaaggttttaaacagaagtttgtgactgagatctgggcagcaacatcagg |
31869838 |
T |
|
| Q |
211 |
gtttttgttgttactgtgactataattgagatagcatcggtcacatttgagtgcaattctctgttatatcaaggaccatggcgcgaccacaatttaaaac |
310 |
Q |
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| T |
31869839 |
gtttttgttgttactgtgactataattgagatagcatcggtcgcatttgagtgcaattctctgttatatcaaggaccatggcgcgaccacaatttaaaac |
31869938 |
T |
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| Q |
311 |
gttacactacattaccccgatgcatgtttaaagtttcaacatcaagc-aaactatacaaagccaatataaactaaaccgtgcacaattttgttttgttgt |
409 |
Q |
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| T |
31869939 |
gttacactacattaccccgatgcatgtttaaagtttcaacatcaagcaaaactatacaaagccaatataaactaaaccgtgcacaa-----ttttgttgt |
31870033 |
T |
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| Q |
410 |
taagttacttttcagcacaaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggtcacctttga |
509 |
Q |
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| T |
31870034 |
taagttacttttcaacacaaatcaatttacttcaaactccttttaactaaaatcaaaattaactaaaacaaaaaccaagattaagcagggtcacctttga |
31870133 |
T |
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| Q |
510 |
atcctctttaaggtttgtggattaatctcagcctgtgtaggagg |
553 |
Q |
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| T |
31870134 |
atcctctttaaggtttgtggattaatctcagcctgtgtaggagg |
31870177 |
T |
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