View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_low_21 (Length: 227)
Name: NF17094_low_21
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1792684 - 1792457
Alignment:
| Q |
1 |
cacaaggagttatttgtgttttgcacattctttgagccaagggttttgtcattgccacgtttacccatgttttcctctaaatttgacaacgattaagaaa |
100 |
Q |
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| T |
1792684 |
cacaaggagttatttgtgttttgcacattctttgaaccaagggttttgtcattgccacgtttacccatgttttcctctaaatttgacaacgattaagaaa |
1792585 |
T |
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| Q |
101 |
gtcccaagaataaaagac-nnnnnnngtgtgattcaatgatatctttatcattttcgtacttaagtgttatgcaaatttgtataagcttccatgcctttt |
199 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792584 |
gtcccaagaataaaagacaaaaaaaagtgtgattcaatgatatctttatcattttcgtacttaagtgttatgcaaatttgtataagcttccatgcctttt |
1792485 |
T |
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| Q |
200 |
ttgcaaagtttcatgccttatgggaatt |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1792484 |
ttgcaaagtttcatgccttatgggaatt |
1792457 |
T |
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