View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_low_4 (Length: 509)
Name: NF17094_low_4
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 498
Target Start/End: Original strand, 25740046 - 25740531
Alignment:
| Q |
11 |
ttattctcatgacgaagtcggttgttatcatgttgnnnnnnnagtggttagtcttgaattcttgtcactgtctttgtctttgtctttgtcccaacaaaaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25740046 |
ttattctcatgacgaagtcggttgttatcatgttgtttttttagtggttagtcttgaattcttgtcactgtctttgtctttgtctttgtcccaacaaaaa |
25740145 |
T |
|
| Q |
111 |
ggttaatttatcactgtnnnnnnnnncgtgttgaattgccactgttttatgactgatatcttcgaataatacatttgtcacgatgnnnnnnnccggtgta |
210 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
25740146 |
ggttaatttatcactgtaaaaaac--cgtgttgaattgccactgttttatgacttatatcttcgaataatacatttgtcacgatgtttttttccggtgta |
25740243 |
T |
|
| Q |
211 |
taagagtatcgaacctaggcaactaaagctgaagggtagattttcaactagtaagataacttgtcgcggtgtttttactgtgactgattatgttgacatg |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25740244 |
taagagtatcgaacctaggccactaaagctgaagggtagattttcaactagtaagataacttgtcgcggtgtttttactgtgactgattatgttaacatg |
25740343 |
T |
|
| Q |
311 |
ttgtctgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25740344 |
ttgtctgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttt |
25740443 |
T |
|
| Q |
411 |
tgttttctatgtcctcaggtgatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattctactta |
498 |
Q |
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| T |
25740444 |
tgttttcaatgtaatcaggtgatttaactttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattctactta |
25740531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 293 - 498
Target Start/End: Original strand, 25744026 - 25744231
Alignment:
| Q |
293 |
actgattatgttgacatgttgtctgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacatttt |
392 |
Q |
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|||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744026 |
actgattatgttaatatgttctctgcagatatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacatttt |
25744125 |
T |
|
| Q |
393 |
cttcagcttgccttcttttgttttctatgtcctcaggtgatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattc |
492 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744126 |
cttcagcttgccttcttttgttttcaatgtaatcaggtgatttaactttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattc |
25744225 |
T |
|
| Q |
493 |
tactta |
498 |
Q |
| |
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|||||| |
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| T |
25744226 |
tactta |
25744231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 331 - 498
Target Start/End: Original strand, 17383269 - 17383435
Alignment:
| Q |
331 |
gttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttctatgtcctcaggt |
430 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||| ||| || |
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| T |
17383269 |
gttttggatcgcacaaattggaaggtaaacattcttacatcactactcattccatacattatcttcagcttgctttctatagttttctatgtcatcaagt |
17383368 |
T |
|
| Q |
431 |
gatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattctactta |
498 |
Q |
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| T |
17383369 |
gatttgtctttcacac-ttgatattatcaaatatgtaccttcatttttgtcacatattattatactta |
17383435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 327 - 498
Target Start/End: Original strand, 8534851 - 8535020
Alignment:
| Q |
327 |
gttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttcttttgttttctatgtcctc |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| || |
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| T |
8534851 |
gttggttttggatcgcacaaactggaagacaaac-ttcttacatcactactcattccatacattttcttcagcttgatttctatagttttctatgtcatc |
8534949 |
T |
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| Q |
427 |
aggtgatttatctttcacgctttgatgttatcaaatttgtaccttcatttttgtctaatattattctactta |
498 |
Q |
| |
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|| |||||| |||||||| | ||||| ||||||||| || |||||||||||||||| ||||||||||||||| |
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| T |
8534950 |
agatgatttgtctttcacac-ttgatattatcaaatatgcaccttcatttttgtctcatattattctactta |
8535020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 36450074 - 36450133
Alignment:
| Q |
327 |
gttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccata |
386 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36450074 |
gttggttttggatcgcacatactggaagacaaacattcttacatcactactcattccata |
36450133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 12510035 - 12510115
Alignment:
| Q |
315 |
ctgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttctt |
395 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |
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| T |
12510035 |
ctgcagttatttgttgattttggatcgtacaaactggaagaccaacattttcacatcactactcattccctacattttctt |
12510115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 12513869 - 12513960
Alignment:
| Q |
316 |
tgcagttatttgttggttttggatcgcacaaactggaagacaaacattcttacatcactactcattccatacattttcttcagcttgccttc |
407 |
Q |
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||||||||| ||||| ||||||||| ||||||||| |||| |||| | | |||||||||||| ||||||||||||| |||||| ||||||| |
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| T |
12513869 |
tgcagttatctgttgagtttggatcgtacaaactgggagaccaacactttcacatcactactcgttccatacatttttttcagcctgccttc |
12513960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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