View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17094_low_5 (Length: 498)

Name: NF17094_low_5
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17094_low_5
NF17094_low_5
[»] chr3 (2 HSPs)
chr3 (224-482)||(23509689-23509947)
chr3 (31-158)||(23510009-23510136)
[»] chr2 (1 HSPs)
chr2 (35-138)||(15585564-15585668)
[»] chr4 (5 HSPs)
chr4 (35-154)||(4453820-4453938)
chr4 (42-142)||(22783330-22783430)
chr4 (31-136)||(20804536-20804649)
chr4 (273-408)||(22783559-22783695)
chr4 (227-357)||(4453622-4453750)
[»] chr8 (2 HSPs)
chr8 (42-152)||(4309424-4309534)
chr8 (90-144)||(28422445-28422498)
[»] chr1 (2 HSPs)
chr1 (31-114)||(11665617-11665700)
chr1 (95-158)||(25219354-25219417)
[»] chr6 (2 HSPs)
chr6 (42-102)||(31801002-31801062)
chr6 (42-138)||(3952555-3952648)
[»] chr7 (1 HSPs)
chr7 (71-144)||(23375388-23375461)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 224 - 482
Target Start/End: Complemental strand, 23509947 - 23509689
Alignment:
Q  224 cacgaatagatgaaaaatcaaggtctactaaccctagaccataaaaaatataagagtatgatttgtttgattgttttccagtgtagacatattttaggta 323  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23509947 cacgaatcaatgaaaaatcaaggtctactaaccctagaccataaaaaatataagagtatgatttgtttgattgttttccagtgtagacatattttatgta 23509848  T
Q  324 taatattgtattaaatttggcgttctaaaaccttcatcagtcttcaactcacttaagacattagggagtatgaacattaaagagagttaatgtcaaggaa 423  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23509847 taatattgtattaaatttggcgtttcaaaaccttcatctgtcttcaactcacttaagacattagggagtatgaacattgaagagagttaatgtcaaggaa 23509748  T
Q  424 ttggcctaaccatttttatttatcaaatattattaagccaagcaatatgtcaacactgt 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23509747 ttggcctaaccatttttatttatcaaatattattaagccaagcaatatgtcaacactgt 23509689  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 23510136 - 23510009
Alignment:
Q  31 attcatatagtttaatatgtgtttagacatcacgagcaactaaacctctctaaattagatcatgaaagaggagcttcttgtaattgtttgaatcatgtaa 130  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||    
T  23510136 attcatatagtttaatatgtgtttagacatcacgagtaactaaacctctctaggctagatcatgaaagaagagcttcttgtaattgtttgaatcatgtaa 23510037  T
Q  131 ctttaaataattctttggatttcagttg 158  Q
    ||||||||||||||||||||||||||||    
T  23510036 ctttaaataattctttggatttcagttg 23510009  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 15585564 - 15585668
Alignment:
Q  35 atatagtttaatatgtgtttagacatcacgagcaactaaacctctctaaattagatcatgaaagag-gagcttcttgtaattgtttgaatcatgtaactt 133  Q
    ||||||||||||||||| |||||||||| ||| | ||||| | ||||| |||||||||||||| ||  |||||| ||||||||||||| |||||||||||    
T  15585564 atatagtttaatatgtgcttagacatcatgagtagctaaaacactctagattagatcatgaaaaagaaagcttcatgtaattgtttgattcatgtaactt 15585663  T
Q  134 taaat 138  Q
    |||||    
T  15585664 taaat 15585668  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 4453938 - 4453820
Alignment:
Q  35 atatagtttaatatgtgtttagacatcacgagcaactaaacctctctaaattagatcatgaaagaggagcttcttgtaattgtttgaatcatgtaacttt 134  Q
    |||||||||||||| ||||||||||||| ||| | ||||| ||||||| | ||| |  ||||| ||||||||| ||||||| ||||||||||||||||||    
T  4453938 atatagtttaatatatgtttagacatcatgagtagctaaatctctctagactaggtggtgaaa-aggagcttcatgtaattatttgaatcatgtaacttt 4453840  T
Q  135 aaataattctttggatttca 154  Q
    |||| ||| | |||||||||    
T  4453839 aaatgattatgtggatttca 4453820  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 22783330 - 22783430
Alignment:
Q  42 ttaatatgtgtttagacatcacgagcaactaaacctctctaaattagatcatgaaagaggagcttcttgtaattgtttgaatcatgtaactttaaataat 141  Q
    |||||||||||||||| |||| ||| | |||||| ||| ||    || ||||||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  22783330 ttaatatgtgtttagatatcatgagtatctaaacttctataggccaggtcatgaaagagaagcttcctgtcattgtttgaatcatgtaactttaaataat 22783429  T
Q  142 t 142  Q
    |    
T  22783430 t 22783430  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 20804536 - 20804649
Alignment:
Q  31 attcatatagtttaatatgtgtttaga-------catcacgagcaactaaacctctctaaattag-atcatgaaagaggagcttcttgtaattgtttgaa 122  Q
    |||||||||||||||||||||||||||       ||||| ||| |||||||||||||||   ||| ||||||||| | || |||||||||||||||||||    
T  20804536 attcatatagtttaatatgtgtttagagtttagacatcatgagtaactaaacctctctaggctaggatcatgaaatatgaccttcttgtaattgtttgaa 20804635  T
Q  123 tcatgtaactttaa 136  Q
    ||||| ||||||||    
T  20804636 tcatgcaactttaa 20804649  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 408
Target Start/End: Original strand, 22783559 - 22783695
Alignment:
Q  273 ataagagtatgatttgtttgattgttttccagtgtagacatattttaggtataatattgtattaaatttggcgttctaaaaccttcatcagtcttca-ac 371  Q
    |||||||||| | ||||| |||||||  | ||  |||||||||| |||| |||||  |||||||||||||| |||||||||||| ||   ||| | | ||    
T  22783559 ataagagtataaattgttcgattgttgcctagcatagacatattataggaataattgtgtattaaatttggtgttctaaaacctacaatggtcatgacac 22783658  T
Q  372 tcacttaagacattagggagtatgaacattaaagaga 408  Q
    |||| |||||||||||||||||||| |||| ||||||    
T  22783659 tcacctaagacattagggagtatgaccattgaagaga 22783695  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 357
Target Start/End: Complemental strand, 4453750 - 4453622
Alignment:
Q  227 gaatagatgaaaaatcaaggtctactaaccctagaccataaaaaatataagagtatgatttgtttgattgttttccagtgtagacatattttaggtataa 326  Q
    |||| |||| |||||||| ||||| ||||||||| |   || ||  |||||||||| ||||||| |||||||| |  | ||| ||||||| |||| ||||    
T  4453750 gaattgatgcaaaatcaatgtctattaaccctagccttgaataagaataagagtataatttgtt-gattgtttcctggagta-acatattctaggaataa 4453653  T
Q  327 tattgtattaaatttggcgttctaaaacctt 357  Q
    |  ||||||||||||| ||||||||||||||    
T  4453652 ttatgtattaaatttgacgttctaaaacctt 4453622  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 4309534 - 4309424
Alignment:
Q  42 ttaatatgtgtttagacatcacgagcaactaaacctctctaaattagatcatgaaagaggagcttcttgtaattgtttgaatcatgtaactttaaataat 141  Q
    ||||||| |||||||| |||| ||  | |||||||||||||   ||| |||||||||||||||||| ||||||||||||||||  | | |||||||||||    
T  4309534 ttaatatatgtttagatatcatgaatatctaaacctctctaggctaggtcatgaaagaggagcttcatgtaattgtttgaatcgagcagctttaaataat 4309435  T
Q  142 tctttggattt 152  Q
    | |||||||||    
T  4309434 tttttggattt 4309424  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 28422498 - 28422445
Alignment:
Q  90 tcatgaaagaggagcttcttgtaattgtttgaatcatgtaactttaaataattct 144  Q
    ||||||||||||| |||  ||||||||||||| ||||||||||||||||||||||    
T  28422498 tcatgaaagaggaactttatgtaattgtttga-tcatgtaactttaaataattct 28422445  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 11665617 - 11665700
Alignment:
Q  31 attcatatagtttaatatgtgtttagacatcacgagcaactaaacctctctaaattagatcatgaaagaggagcttcttgtaat 114  Q
    |||| |||||||||  ||||||||||| |||  ||| || ||||||||||||  ||||||||||||||||||||||||||||||    
T  11665617 attcgtatagtttagcatgtgtttagatatcctgagtaattaaacctctctaggttagatcatgaaagaggagcttcttgtaat 11665700  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 25219354 - 25219417
Alignment:
Q  95 aaagaggagcttcttgtaattgtttgaatcatgtaactttaaataattctttggatttcagttg 158  Q
    ||||||| ||||| | || |||||| |||| ||||||||||||||||||||| ||||| |||||    
T  25219354 aaagaggggcttcctatagttgtttaaatcttgtaactttaaataattctttagattttagttg 25219417  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 31801062 - 31801002
Alignment:
Q  42 ttaatatgtgtttagacatcacgagcaactaaacctctctaaattagatcatgaaagagga 102  Q
    ||||||| ||||||||||||| ||| | ||||||||||||| || || |||||||||||||    
T  31801062 ttaatatatgtttagacatcatgagtagctaaacctctctagatcaggtcatgaaagagga 31801002  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 3952555 - 3952648
Alignment:
Q  42 ttaatatgtgtttagacatcacgagcaactaaacctctctaaattagatcatgaaagaggagcttct-tgtaattgtttgaatcatgtaactttaaat 138  Q
    ||||||||||||||||||||| |||   ||| |||||||||  |||| |||| |||||||| ||||| |||||||| || ||| ||||||||||||||    
T  3952555 ttaatatgtgtttagacatcatgag---ctacacctctctaggttaggtcattaaagaggaacttctctgtaattg-ttcaattatgtaactttaaat 3952648  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 23375461 - 23375388
Alignment:
Q  71 taaacctctctaaattagatcatgaaagaggagctt-cttgtaattgtttgaatcatgtaactttaaataattct 144  Q
    ||||||||||||  |||| ||||||||||||| ||| |||||||||||| | || ||||||||||||| ||||||    
T  23375461 taaacctctctaggttaggtcatgaaagaggaacttccttgtaattgttcg-attatgtaactttaaacaattct 23375388  T

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