View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_low_6 (Length: 486)
Name: NF17094_low_6
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 34882225 - 34882694
Alignment:
| Q |
1 |
gcatgtcgaagaatatgacatcaacaattttccatccttaaggtctgtttttaattcaactataaagattttttcatcagtcaaccccacatattttcca |
100 |
Q |
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| T |
34882225 |
gcatgtcttagaaaatgacatcaacaattttccatccttacggtctgtttttaattcaactttaaagattttttcatcagtcaaccccacatattttcca |
34882324 |
T |
|
| Q |
101 |
tccccgcatgttctcatttgatgtgctgtctgcatgaaatcatggtatgcagattgtaaggaatcttgatacgaactcctaatgcacttatctgcaaact |
200 |
Q |
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| T |
34882325 |
tccccgcacgttctcatt-gatgtgctgtctgcatgaaatcatggtatgcagattgtaaggaatcttgatacgaactcctaatgcacttatctgcaaact |
34882423 |
T |
|
| Q |
201 |
tctaaaagacgtctgaaaccttgacttcgaggtttttgatgtctgcctgaccacatttgaatgca-nnnnnnnnnacaatatcaaggattgtaatatgac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
34882424 |
tctaaaagacgtctgaaaccttgacttcgaggtttttgatgtctgcctgaccacatttgaatgcattttttttttacaatatcaaggattgtaatgtgac |
34882523 |
T |
|
| Q |
300 |
tatgctgtaactgtttaaattttgcttttgtgattctataaacacggcatggttttgagatattagcaaatgattctataaactcgacatggtttaaaga |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34882524 |
tatgctgtaactgtttaaattttgcttttgtgattctataaacacggcatggttttgagatattagcaaatgattctataaactcgacatggtttaaaga |
34882623 |
T |
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| Q |
400 |
ttctagcaactttactataaactttgctaagataaacaacttatttatgggctcatggcagaagaatttat |
470 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
34882624 |
ttctagcaactttactataaactttgctaggataaacaacctatttatgggctcatggcagaagaatttat |
34882694 |
T |
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