View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17094_low_7 (Length: 453)
Name: NF17094_low_7
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17094_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 33034460 - 33034057
Alignment:
| Q |
20 |
aaattcacacctcctcactctttattagtctttgagaaacattgaaaatacaagaaccagttctgtcttctcacaatcagtcatagttaagaaaaaagca |
119 |
Q |
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| T |
33034460 |
aaattcacacctcctcactctttattagtctttgagaaacattgaaaatacaagaaccagttctgtcttctcacaatcagtcatagttaagaaaaaagca |
33034361 |
T |
|
| Q |
120 |
acaatgaaaacagatgtctccaattccaaagcacagtgtttaggtgattttcagaagcaaaccactttcacttgatcttgaaatttgagaaactctttta |
219 |
Q |
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| T |
33034360 |
acaatgaaaacagatgtctccaattccaaagcacagtgtttaggtgattttcagaagcaaaccactttcacttgatcttgaaatttgagaaactctttta |
33034261 |
T |
|
| Q |
220 |
ctatcatctccttatcttaaagcttttcttgccatgtttttgtcaccactaaagtagtttcatctctaaactattccaagtaagtttttctttgcgtttg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33034260 |
ctatcatctccttatcttaaagcttttcttgccatgtttttgtcaccactaaagtagtttcatctctaaactattccaagtaagtttttctttgcgtttg |
33034161 |
T |
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| Q |
320 |
ttttcttagaatgaaaatctttgtagattttaatgaaacaagcatctgcatgcacttctttgtttttggatactttgatgttgttagttctctatattaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33034160 |
ttttcttagaatgaaaatctttgtagattttaatgaaacaagtatctgcatgcacttctttgtttttggatactttgatgttgttagttctctatattaa |
33034061 |
T |
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| Q |
420 |
tgtt |
423 |
Q |
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|||| |
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| T |
33034060 |
tgtt |
33034057 |
T |
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