View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17094_low_9 (Length: 402)

Name: NF17094_low_9
Description: NF17094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17094_low_9
NF17094_low_9
[»] chr6 (15 HSPs)
chr6 (8-316)||(34598460-34598769)
chr6 (11-240)||(11539451-11539683)
chr6 (154-284)||(34625689-34625819)
chr6 (11-102)||(34754852-34754943)
chr6 (312-388)||(34625528-34625604)
chr6 (320-388)||(11539249-11539317)
chr6 (280-316)||(34625625-34625661)
chr6 (189-236)||(2820373-2820420)
chr6 (192-226)||(32577476-32577510)
chr6 (192-225)||(4945274-4945307)
chr6 (187-232)||(6294543-6294588)
chr6 (210-239)||(15109596-15109625)
chr6 (312-345)||(34598406-34598439)
chr6 (193-241)||(4859126-4859174)
chr6 (187-227)||(19138821-19138861)
[»] chr5 (8 HSPs)
chr5 (194-241)||(9878046-9878093)
chr5 (187-229)||(28322251-28322293)
chr5 (190-244)||(12241053-12241107)
chr5 (187-239)||(9895147-9895199)
chr5 (187-231)||(11601685-11601729)
chr5 (188-220)||(12969538-12969570)
chr5 (192-247)||(18542222-18542278)
chr5 (213-241)||(39424639-39424667)
[»] chr4 (8 HSPs)
chr4 (186-256)||(2796529-2796599)
chr4 (192-241)||(47040243-47040292)
chr4 (195-239)||(32369927-32369971)
chr4 (190-237)||(31277034-31277081)
chr4 (194-240)||(35212741-35212787)
chr4 (176-231)||(39598791-39598845)
chr4 (186-232)||(20119952-20119998)
chr4 (199-231)||(24379833-24379865)
[»] chr7 (2 HSPs)
chr7 (192-257)||(28266456-28266521)
chr7 (193-229)||(40826525-40826561)
[»] chr3 (3 HSPs)
chr3 (192-231)||(49636838-49636877)
chr3 (192-232)||(18268017-18268057)
chr3 (190-241)||(45289826-45289878)
[»] chr8 (7 HSPs)
chr8 (198-238)||(10170404-10170444)
chr8 (186-229)||(43806202-43806245)
chr8 (198-231)||(2517115-2517148)
chr8 (194-231)||(25799156-25799193)
chr8 (191-231)||(1979420-1979460)
chr8 (186-250)||(6252499-6252563)
chr8 (280-316)||(24362323-24362359)
[»] chr2 (5 HSPs)
chr2 (186-238)||(14667657-14667709)
chr2 (192-230)||(17427321-17427359)
chr2 (194-239)||(26787812-26787857)
chr2 (192-229)||(35198243-35198280)
chr2 (205-238)||(42205860-42205893)
[»] chr1 (6 HSPs)
chr1 (187-239)||(47126266-47126318)
chr1 (194-240)||(17080895-17080941)
chr1 (185-231)||(48317605-48317651)
chr1 (187-232)||(3451862-3451907)
chr1 (192-241)||(26462657-26462706)
chr1 (193-229)||(1118409-1118445)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 34598769 - 34598460
Alignment:
Q  8 aagcataggaaaaaagagggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgagatgtataatcaaa 107  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34598769 aagcataagaaaaaagagggaaaacatccatactgctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgagatgtataatcaaa 34598670  T
Q  108 agtattacattacatgtagcacggacagttcttgaggaagacgtgtccgatatcctgatgttggacaacgacacgacataacatatgtgattacatccaa 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34598669 agtattacattacatgtagcaccgacagttcttgaggaagacgtgtctgatatcctgatgttggacaacgacacgacataacatatgtgattacatccaa 34598570  T
Q  208 ttaattcattttctcaaattattattggtgtc-gaggtatcaatttcatgtttggtgtccatgcttcatagttttcaattaattcattttttcaaactat 306  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34598569 ttaattcattttctcaaattattatcggtgtcagaggtatcaatttcatgtttggtgtccatgcttcatagttttcaattaattcattttttcaaactat 34598470  T
Q  307 tacttgtgtc 316  Q
    ||||||||||    
T  34598469 tacttgtgtc 34598460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 11539683 - 11539451
Alignment:
Q  11 cataggaaaaaagagggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgagatgtataatcaaaagt 110  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  11539683 cataagaaaaaagagggaaaacatccatactgctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgtgatgtataatcaaaatt 11539584  T
Q  111 attacattacatgtagcacggacagttcttgaggaagacgtgtccgata---tcctgatgttggacaacgacacgacataacatatgtgattacatccaa 207  Q
    | |  |||||||||||||| ||||  ||||| ||||||||| |||||||   | | ||| |   ||||||||| ||||| |||||||||||| ||||||     
T  11539583 actggattacatgtagcaccgacacatcttgtggaagacgtatccgatacgtttcagatatccaacaacgacatgacatcacatatgtgatttcatccac 11539484  T
Q  208 ttaattcattttctcaaattattattggtgtcg 240  Q
    |||||  | |||| |||||||||||||||||||    
T  11539483 ttaatatactttcacaaattattattggtgtcg 11539451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 154 - 284
Target Start/End: Complemental strand, 34625819 - 34625689
Alignment:
Q  154 ccgatatcctgatgttggacaacgacacgacataacatatgtgattacatccaattaattcattttctcaaattattattggtgtcgaggtatcaatttc 253  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||    
T  34625819 ccgatatcctgttgttggacaacgacacgacataacatatgtgattacattcaattaattcattttctcaaattattatcggtgtcgatgtatcaatttc 34625720  T
Q  254 atgtttggtgtccatgcttcatagttttcaa 284  Q
    |||||||||||||||||||||||||||||||    
T  34625719 atgtttggtgtccatgcttcatagttttcaa 34625689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 34754943 - 34754852
Alignment:
Q  11 cataggaaaaaagagggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgagatgtataa 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  34754943 cataagaaaaaagagggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaactgtgatgtataa 34754852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 34625604 - 34625528
Alignment:
Q  312 gtgtcggtggtgcttcatagtatccaagatcacattatttactagctagtatagaacctaccatagggtaccttatg 388  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34625604 gtgttggtggtgcttcatagtatccaagatcacattatttactagctagtatagaacctaccatagggtaccttatg 34625528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 11539317 - 11539249
Alignment:
Q  320 ggtgcttcatagtatccaagatcacattatttactagctagtatagaacctaccatagggtaccttatg 388  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  11539317 ggtgcttcatagtagtcaagatcacattatttacttgctagtatagaaccaaccatagggtaccttatg 11539249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 34625661 - 34625625
Alignment:
Q  280 ttcaattaattcattttttcaaactattacttgtgtc 316  Q
    |||||||||||||||||||||||||||||||||||||    
T  34625661 ttcaattaattcattttttcaaactattacttgtgtc 34625625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 2820373 - 2820420
Alignment:
Q  189 catatgtgattacatccaattaattcattttctcaaattattattggt 236  Q
    ||||||||||||||| || ||| || ||||||||||||||||||||||    
T  2820373 catatgtgattacattcatttattttattttctcaaattattattggt 2820420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 32577476 - 32577510
Alignment:
Q  192 atgtgattacatccaattaattcattttctcaaat 226  Q
    |||||||||||| ||||||||||||||||||||||    
T  32577476 atgtgattacattcaattaattcattttctcaaat 32577510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 4945307 - 4945274
Alignment:
Q  192 atgtgattacatccaattaattcattttctcaaa 225  Q
    |||||||||||| |||||||||||||||||||||    
T  4945307 atgtgattacattcaattaattcattttctcaaa 4945274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 6294543 - 6294588
Alignment:
Q  187 aacatatgtgattacatccaattaattcattttctcaaattattat 232  Q
    |||| ||| |||| ||| ||||||||||||||||||||||||||||    
T  6294543 aacacatgcgattgcattcaattaattcattttctcaaattattat 6294588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 15109596 - 15109625
Alignment:
Q  210 aattcattttctcaaattattattggtgtc 239  Q
    ||||||||||||||||||||||||||||||    
T  15109596 aattcattttctcaaattattattggtgtc 15109625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 34598439 - 34598406
Alignment:
Q  312 gtgtcggtggtgcttcatagtatccaagatcaca 345  Q
    |||| |||||||||||||||||||||||||||||    
T  34598439 gtgtgggtggtgcttcatagtatccaagatcaca 34598406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 4859126 - 4859174
Alignment:
Q  193 tgtgattacatccaattaattcattttctcaaattattattggtgtcga 241  Q
    |||||||||||   ||||  |||||||||||||||||||||||||||||    
T  4859126 tgtgattacattggattatgtcattttctcaaattattattggtgtcga 4859174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 19138821 - 19138861
Alignment:
Q  187 aacatatgtgattacatccaattaattcattttctcaaatt 227  Q
    ||||||||||||||||| | ||||||||||| |||||||||    
T  19138821 aacatatgtgattacattcgattaattcattctctcaaatt 19138861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 9878046 - 9878093
Alignment:
Q  194 gtgattacatccaattaattcattttctcaaattattattggtgtcga 241  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  9878046 gtgattacattcaattaattcatattctcaaattattattggtgtcga 9878093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 28322293 - 28322251
Alignment:
Q  187 aacatatgtgattacatccaattaattcattttctcaaattat 229  Q
    |||| |||||||||||| |||||||||||||||||||||||||    
T  28322293 aacacatgtgattacattcaattaattcattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 12241107 - 12241053
Alignment:
Q  190 atatgtgattacatccaattaattcattttctcaaattattattggtgtcgaggt 244  Q
    ||||||| |||||| |||| | |||||| ||||||||||||| ||||||||||||    
T  12241107 atatgtggttacattcaataatttcattgtctcaaattattactggtgtcgaggt 12241053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 9895199 - 9895147
Alignment:
Q  187 aacatatgtgattacatccaattaattcattttctcaaattattattggtgtc 239  Q
    |||| |||||||||| | ||| ||||| ||||||||||||||||| |||||||    
T  9895199 aacacatgtgattacgttcaaataatttattttctcaaattattactggtgtc 9895147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 11601729 - 11601685
Alignment:
Q  187 aacatatgtgattacatccaattaattcattttctcaaattatta 231  Q
    ||||||||||||||||| ||||||||| | ||||| |||||||||    
T  11601729 aacatatgtgattacattcaattaatttagtttcttaaattatta 11601685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 12969570 - 12969538
Alignment:
Q  188 acatatgtgattacatccaattaattcattttc 220  Q
    |||||||||||||||| ||||||||||||||||    
T  12969570 acatatgtgattacattcaattaattcattttc 12969538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 18542222 - 18542278
Alignment:
Q  192 atgtgattacatccaattaattc-attttctcaaattattattggtgtcgaggtatc 247  Q
    |||||||||||| |||||| ||  ||||||||||||||||| ||||||||| |||||    
T  18542222 atgtgattacattcaattacttgtattttctcaaattattactggtgtcgatgtatc 18542278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 39424667 - 39424639
Alignment:
Q  213 tcattttctcaaattattattggtgtcga 241  Q
    |||||||||||||||||||||||||||||    
T  39424667 tcattttctcaaattattattggtgtcga 39424639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 2796599 - 2796529
Alignment:
Q  186 taacatatgtgattacatccaattaattcattttctcaaattattattggtgtcgaggtatcaatttcatg 256  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||| |||||| || || ||||| |||||    
T  2796599 taacacatgtgattaaattcaattaattcattttctcaaattattaatggtgttgaagtgtcaatgtcatg 2796529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 47040243 - 47040292
Alignment:
Q  192 atgtgattacatccaattaattcattttctcaaattattattggtgtcga 241  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  47040243 atgtgattatatccagttaattcattttctcaaattatcattggtgtcga 47040292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 32369927 - 32369971
Alignment:
Q  195 tgattacatccaattaattcattttctcaaattattattggtgtc 239  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  32369927 tgattacattcaattaattcattttctcaaattattatcggtgtc 32369971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 31277034 - 31277081
Alignment:
Q  190 atatgtgattacatccaattaattcattttctcaaattattattggtg 237  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  31277034 atatgtgattacattcaattagttcattttctcaaattattatcggtg 31277081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 35212741 - 35212787
Alignment:
Q  194 gtgattacatccaattaattcattttctcaaattattattggtgtcg 240  Q
    |||||||||| |||||| || ||||||||||||||||||||||||||    
T  35212741 gtgattacattcaattatttaattttctcaaattattattggtgtcg 35212787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 39598791 - 39598845
Alignment:
Q  176 cgacacgacataacatatgtgattacatccaattaattcattttctcaaattatta 231  Q
    |||||||||| |||| |||||||||||| |||||||||||||||| ||||| ||||    
T  39598791 cgacacgacacaaca-atgtgattacattcaattaattcattttcgcaaatcatta 39598845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 20119998 - 20119952
Alignment:
Q  186 taacatatgtgattacatccaattaattcattttctcaaattattat 232  Q
    ||||| ||||||||||||  ||||| |||||||||||||||||||||    
T  20119998 taacacatgtgattacattaaattatttcattttctcaaattattat 20119952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 24379865 - 24379833
Alignment:
Q  199 tacatccaattaattcattttctcaaattatta 231  Q
    ||||||||||||||||||||||||| |||||||    
T  24379865 tacatccaattaattcattttctcagattatta 24379833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 28266521 - 28266456
Alignment:
Q  192 atgtgattacatccaattaattcattttctcaaattattattggtgtcgaggtatcaatttcatgt 257  Q
    ||||| |||||||||||||||| |||||||||||||||||  |||||||| ||||| || ||||||    
T  28266521 atgtgtttacatccaattaatttattttctcaaattattaccggtgtcgatgtatctatgtcatgt 28266456  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 40826561 - 40826525
Alignment:
Q  193 tgtgattacatccaattaattcattttctcaaattat 229  Q
    |||||||| || |||||||||||||||||||||||||    
T  40826561 tgtgattatattcaattaattcattttctcaaattat 40826525  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 49636838 - 49636877
Alignment:
Q  192 atgtgattacatccaattaattcattttctcaaattatta 231  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  49636838 atgtgattacattcaattaattcattttctcaaattatta 49636877  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 18268017 - 18268057
Alignment:
Q  192 atgtgattacatccaattaattcattttctcaaattattat 232  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  18268017 atgtgattacgttcaattaattcattttctcaaattattat 18268057  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 45289878 - 45289826
Alignment:
Q  190 atatgtgattacatccaattaattcatttt-ctcaaattattattggtgtcga 241  Q
    |||||||||||||| ||||||  ||||||| ||||||||||||||| ||||||    
T  45289878 atatgtgattacattcaattatatcatttttctcaaattattattgttgtcga 45289826  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 10170404 - 10170444
Alignment:
Q  198 ttacatccaattaattcattttctcaaattattattggtgt 238  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  10170404 ttacattcaattaatttattttctcaaattattattggtgt 10170444  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 43806202 - 43806245
Alignment:
Q  186 taacatatgtgattacatccaattaattcattttctcaaattat 229  Q
    ||||||||||||||| || ||||||||||||||||| |||||||    
T  43806202 taacatatgtgattatattcaattaattcattttcttaaattat 43806245  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 2517148 - 2517115
Alignment:
Q  198 ttacatccaattaattcattttctcaaattatta 231  Q
    |||||| |||||||||||||||||||||||||||    
T  2517148 ttacattcaattaattcattttctcaaattatta 2517115  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 25799193 - 25799156
Alignment:
Q  194 gtgattacatccaattaattcattttctcaaattatta 231  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  25799193 gtgatcacattcaattaattcattttctcaaattatta 25799156  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 1979460 - 1979420
Alignment:
Q  191 tatgtgattacatccaattaattcattttctcaaattatta 231  Q
    |||||||||||||  |||||||| |||||||||||||||||    
T  1979460 tatgtgattacatttaattaattaattttctcaaattatta 1979420  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 6252499 - 6252563
Alignment:
Q  186 taacatatgtgattacatccaattaattcattttctcaaattattattggtgtcgaggtatcaat 250  Q
    ||||| ||||||||||||  |||||| | ||||||||||||||||||  | ||||| ||||||||    
T  6252499 taacaaatgtgattacatttaattaaattattttctcaaattattatcagcgtcgacgtatcaat 6252563  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 24362359 - 24362323
Alignment:
Q  280 ttcaattaattcattttttcaaactattacttgtgtc 316  Q
    ||||||||||||||||||||||| | |||||||||||    
T  24362359 ttcaattaattcattttttcaaatttttacttgtgtc 24362323  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 14667709 - 14667657
Alignment:
Q  186 taacatatgtgattacatccaattaattcattttctcaaattattattggtgt 238  Q
    ||||||||||||||| || |||||| |||||||||||||||||| || |||||    
T  14667709 taacatatgtgattatattcaattagttcattttctcaaattataataggtgt 14667657  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 17427321 - 17427359
Alignment:
Q  192 atgtgattacatccaattaattcattttctcaaattatt 230  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  17427321 atgtgattaccttcaattaattcattttctcaaattatt 17427359  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 26787812 - 26787857
Alignment:
Q  194 gtgattacatccaattaattcattttctcaaattattattggtgtc 239  Q
    ||||||||||| |||||  ||||||||||||||| |||||||||||    
T  26787812 gtgattacatcgaattatgtcattttctcaaatttttattggtgtc 26787857  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 35198243 - 35198280
Alignment:
Q  192 atgtgattacatccaattaattcattttctcaaattat 229  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  35198243 atgtgattacattcaattaattcattttcttaaattat 35198280  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 42205860 - 42205893
Alignment:
Q  205 caattaattcattttctcaaattattattggtgt 238  Q
    ||||||| ||||||||||||||||||||||||||    
T  42205860 caattaagtcattttctcaaattattattggtgt 42205893  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 47126318 - 47126266
Alignment:
Q  187 aacatatgtgattacatccaattaattcattttctcaaattattattggtgtc 239  Q
    ||||||||||  ||||| |||||| |||||||||| |||||||||||||||||    
T  47126318 aacatatgtgggtacattcaattatttcattttcttaaattattattggtgtc 47126266  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 17080895 - 17080941
Alignment:
Q  194 gtgattacatccaattaattcattttctcaaattattattggtgtcg 240  Q
    |||||||||| ||||||  | ||||||||||||||||||||||||||    
T  17080895 gtgattacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 48317651 - 48317605
Alignment:
Q  185 ataacatatgtgattacatccaattaattcattttctcaaattatta 231  Q
    |||| |||||| ||||||| |||||| ||||||||||||||||||||    
T  48317651 ataatatatgttattacattcaattatttcattttctcaaattatta 48317605  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 3451907 - 3451862
Alignment:
Q  187 aacatatgtgattacatccaattaattcattttctcaaattattat 232  Q
    |||| ||||||||| || |||||||||| |||||||||||||||||    
T  3451907 aacacatgtgattaaattcaattaattcgttttctcaaattattat 3451862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 26462657 - 26462706
Alignment:
Q  192 atgtgattacatccaattaattcattttctcaaattattattggtgtcga 241  Q
    |||||||||||| |||||| |||||||||| ||||||||||  |||||||    
T  26462657 atgtgattacattcaattatttcattttcttaaattattatcagtgtcga 26462706  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 1118409 - 1118445
Alignment:
Q  193 tgtgattacatccaattaattcattttctcaaattat 229  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  1118409 tgtgattacattcaattaattcattttttcaaattat 1118445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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