View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17095_high_11 (Length: 351)
Name: NF17095_high_11
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17095_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 21 - 336
Target Start/End: Original strand, 945278 - 945592
Alignment:
| Q |
21 |
aattctattattgttttctcattagttttctgattattttttaatcaagtaataaggaaatggtatacaaatttttcttaagtgtttagagagaagttta |
120 |
Q |
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| T |
945278 |
aattctattattgttttctcattagttttctgattattttttaatcaagtaataaggaaatggtatacaaatttttcttaagtgtttagagagaagttta |
945377 |
T |
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| Q |
121 |
ttcaaattaactcctagcactaattgttcatttgatatgcttgagttaatgttaatgtctactttaaacaaacttctaacaagttgattattatacacta |
220 |
Q |
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| T |
945378 |
ttcaaattaactcctagcactaattgttcatttgatatgcttgagttaatgttaatgtctactttaaacaaacttc-aacaagttgattattatacacta |
945476 |
T |
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| Q |
221 |
aacttaagagatacattgtgatgttgatttaagaatatattcatgcagatatttggagtaataattggtatagttcctcaatttcgaaaactattagttg |
320 |
Q |
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| T |
945477 |
aacttaagagatacattgtgatgttgatttaagaatatattcatgcagatgtttggagtaataattggtatagttcctcaatttcgaaaactactagttg |
945576 |
T |
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| Q |
321 |
gtcaaagtgctcctct |
336 |
Q |
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| T |
945577 |
gtcaaagtgctcctct |
945592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 4098254 - 4098525
Alignment:
| Q |
21 |
aattctattattgttttctcattagttttctgattat-tttttaatcaa-gtaataaggaaa-tggtatacaaatttttcttaagtgtttagagagaagt |
117 |
Q |
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|||||||||| |||||| ||||||||||| || | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4098254 |
aattctattactgttttatcattagtttttattttttatttttaatcaaagtaataaggaaaatggtatacaaatttttcttaagtgtttagagagaagt |
4098353 |
T |
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| Q |
118 |
ttattcaaattaactcctagcactaattgttcatttgatatgcttgagttaatgttaatgtctac-------tttaaacaaacttctaacaagttgatta |
210 |
Q |
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| T |
4098354 |
ttattcaaactaactcccatcactaattgttcatttgatatgcttgagttaatgttaacgtctactttaaagtttaaacaaacttc-aactagttgattg |
4098452 |
T |
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| Q |
211 |
ttatacactaaacttaagagatacattgtgat-gttgatttaagaatatattcatgcagatatttggagtaat |
282 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
4098453 |
ttatacactaatcttaagagatacattgtgatctttgatttaagaatatattcatgcagatttttggagtaat |
4098525 |
T |
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