View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17095_high_13 (Length: 327)
Name: NF17095_high_13
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17095_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 45650609 - 45650831
Alignment:
| Q |
21 |
cccattattgaattgtgtctaacaaagaaagaataaataatatttaccgagactgtcaccaactgcaaatgttttgtcactagcccatgtgttataatca |
120 |
Q |
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| T |
45650609 |
cccattattgaattgtgtctaacaaagaaagaataaataatatttaccgagactgtcaccaactgcaaatgttttgtcactagcccatgtgttataatca |
45650708 |
T |
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| Q |
121 |
gaaccaattgcccaacctgatttatcaccaacggtgtggacagttgcaagagttggcactgccacattgatcactaaaaagaaacctaaaatcaaaggat |
220 |
Q |
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| T |
45650709 |
gaaccaattgcccaacctgatttatcaccaacggtgtggacagttgcaagagttggcactgccacattgatcactaaaaagaagcctaaaatcaaaggat |
45650808 |
T |
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| Q |
221 |
tagagaatgtcatcttaagagat |
243 |
Q |
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| T |
45650809 |
tagagaatgtcatcttaagagat |
45650831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 45643339 - 45643502
Alignment:
| Q |
64 |
ttaccgagactgtcaccaactgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacag |
163 |
Q |
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| T |
45643339 |
ttaccgagactgtcaccaactgcaaaggttttgtcactagtccatgtgttataatcaggaccaactgtccaacctaaaccatctccaacaatgtggtttg |
45643438 |
T |
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| Q |
164 |
ttgcaagagttggcactgccacattgatcactaaaaagaaacctaaaatcaaaggattagagaa |
227 |
Q |
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| T |
45643439 |
ttgccagagtcggcaatggcatagtgatagctaaaaagaagcataaaaccaaagcattagagaa |
45643502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 248
Target Start/End: Complemental strand, 45702991 - 45702807
Alignment:
| Q |
64 |
ttaccgagactgtcaccaactgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacag |
163 |
Q |
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| T |
45702991 |
ttaccgagactgtcaccaactacaaaggttttgtcactagcccatgttgtataatcagaatcaactgtccaacctaaaccatctccaacaatgtggtttg |
45702892 |
T |
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| Q |
164 |
ttgcaagagttggcactgccacattgatcactaaaaagaaacctaaaatcaaaggattagagaatgtcatcttaagagatagtga |
248 |
Q |
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| T |
45702891 |
ttgccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaatagattgtga |
45702807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 248
Target Start/End: Complemental strand, 45886803 - 45886619
Alignment:
| Q |
64 |
ttaccgagactgtcaccaactgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacag |
163 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||| || ||||||| | ||| ||||| ||||| | |
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| T |
45886803 |
ttaccgagactgtcaccaactacaaaggttttgtcactagcccatgttgtataatcagaatcaactgtccaacctaaaccatctccaacaatgtggtttg |
45886704 |
T |
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| Q |
164 |
ttgcaagagttggcactgccacattgatcactaaaaagaaacctaaaatcaaaggattagagaatgtcatcttaagagatagtga |
248 |
Q |
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| T |
45886703 |
ttgccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaatagattgtga |
45886619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 45650828 - 45650871
Alignment:
| Q |
266 |
agatggctatgttttttctaaaggaatgaggctatgaggatatt |
309 |
Q |
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| T |
45650828 |
agatggctatgttttttctaaaggaaggaggctatgaggatatt |
45650871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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