View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17095_high_14 (Length: 314)
Name: NF17095_high_14
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17095_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 32 - 297
Target Start/End: Complemental strand, 45650484 - 45650219
Alignment:
| Q |
32 |
ggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaa |
131 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45650484 |
ggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtcccacaaccattcccctcaa |
45650385 |
T |
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| Q |
132 |
gaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaggttaagtcttcttctagtgctgcttct |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |
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| T |
45650384 |
gaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaagttaaggcttcttctagtgcttcttct |
45650285 |
T |
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| Q |
232 |
gctccttctgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaacc |
297 |
Q |
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| T |
45650284 |
gctccttctgcaacaccatcgccatcagggaaaggttcaccttctgatggcacccctgctgcaacc |
45650219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 32 - 296
Target Start/End: Complemental strand, 45643220 - 45642965
Alignment:
| Q |
32 |
ggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaa |
131 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |
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| T |
45643220 |
ggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtacagacagtagcggtgccacaaccattcccctcaa |
45643121 |
T |
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| Q |
132 |
gaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaggttaagtcttcttctagtgctgcttct |
231 |
Q |
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| T |
45643120 |
agaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttaaggttaagccttctt---------ctgct |
45643030 |
T |
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| Q |
232 |
gctccttctgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaac |
296 |
Q |
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| T |
45643029 |
gctccttctgcaacaccattaccatcagggaaaggttcaccttccgatcgcacccctgccgcaac |
45642965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 45703089 - 45703282
Alignment:
| Q |
17 |
actatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacagcagtggtgccac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||| |
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| T |
45703089 |
actatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactagaaattcaattagtacagacggtagtggtgccac |
45703188 |
T |
|
| Q |
117 |
aaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcaca---ggtggcatgaaactttctgttaaggtt |
207 |
Q |
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| T |
45703189 |
aaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctgttaaggtt |
45703282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 45886901 - 45887094
Alignment:
| Q |
17 |
actatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacagcagtggtgccac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |||||||||||||||| ||| | ||||||||||| |
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| T |
45886901 |
actatgaagctgggtggcacacagtggatgaagttaatgaaagtgactataattcatgcacaactagaaattcaattagtacagacggtagtggtgccac |
45887000 |
T |
|
| Q |
117 |
aaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcaca---ggtggcatgaaactttctgttaaggtt |
207 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||||| |
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| T |
45887001 |
aaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctgttaaggtt |
45887094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 45703307 - 45703371
Alignment:
| Q |
211 |
tcttcttctagtgctgcttctgctccttctgcaacaccatcgccatcagggaaaggttcaccttc |
275 |
Q |
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||||||||| | || |||||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
45703307 |
tcttcttcttcttcttcttctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttc |
45703371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 45887132 - 45887177
Alignment:
| Q |
230 |
ctgctccttctgcaacaccatcgccatcagggaaaggttcaccttc |
275 |
Q |
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||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
45887132 |
ctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttc |
45887177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 45703423 - 45703479
Alignment:
| Q |
240 |
tgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaac |
296 |
Q |
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|||| ||||||| |||||||| ||||||| ||||||||||| |||||| || ||||| |
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| T |
45703423 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaac |
45703479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 45887229 - 45887285
Alignment:
| Q |
240 |
tgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaac |
296 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| ||||||||||| |||||| || ||||| |
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| T |
45887229 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaac |
45887285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 30054843 - 30054756
Alignment:
| Q |
32 |
ggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaac |
119 |
Q |
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|||||||||||||| |||||| |||||||||||| ||||||||| ||| |||||||||||||||| ||||| || ||||||||||| |
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| T |
30054843 |
ggcacacagtggattaagttaaagaaagtgactataaatcatgcataaccagaaattcaattagtacagacagtagcggtgccacaac |
30054756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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