View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17095_high_24 (Length: 209)
Name: NF17095_high_24
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17095_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 43331235 - 43331064
Alignment:
| Q |
12 |
gagcagagaaacatttccaaggtaagatttttgcccacctttgttattaannnnnnnnnnnnnnatgggtagattgttattcttaattttgttttagcta |
111 |
Q |
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| T |
43331235 |
gagcagagaaacatttccaaggtaagatttttgcccacctttgttattaatttttttttt----atgggtagattgttattcttaattttgttttagcta |
43331140 |
T |
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| Q |
112 |
ctattttaaaaattaaactactccatgatgctaatataattgttcatgcnnnnnnnttgtatagctaaatatgatg |
187 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
43331139 |
ctattttaaaaattaaactactccatgatgctaaaataattgttcatgcaaaaaaattgtatagctaaatatgatg |
43331064 |
T |
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