View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17095_high_7 (Length: 393)
Name: NF17095_high_7
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17095_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 14497547 - 14497365
Alignment:
| Q |
3 |
gaagaaaattaagaagacgtgttagaagggacacaaatagcaatggacatgaggtatatgcaaatgcaatgcaatttctgaaaattcacaccaagaaatt |
102 |
Q |
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| T |
14497547 |
gaagaaaattaagaagacgtgttagaagggacacaaatagcaatggacatgaggtatatgcaaatgcaatgcaatttctgaaaattcacaccaagaaatt |
14497448 |
T |
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| Q |
103 |
aaagtttctgtttgttttttaagtttattaaannnnnnnggttcatcaaatgaagcaagacattattaacaaacaaatatact |
185 |
Q |
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| T |
14497447 |
aaagtttctgtttgttttttaagtttattaaatttttttggttcatcaaatgaagcaagacattattaacaaccaaatatact |
14497365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 252 - 374
Target Start/End: Complemental strand, 14497283 - 14497161
Alignment:
| Q |
252 |
ggtatgaaaatgagtattcatggaagcaagaacaataaattttgagtagttggaatttcattgatgatgaaacttcaaccttttttcctatttatagtga |
351 |
Q |
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| T |
14497283 |
ggtatgaaaatgagtattcatggaagcaagaacaataaattttgagtagtgggaatttcattgatgatgaaacttcaaccttttttcctatttatagtga |
14497184 |
T |
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| Q |
352 |
ttgcagaatttcatggttcttca |
374 |
Q |
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| T |
14497183 |
ttgcagaatttcatggttcttca |
14497161 |
T |
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