View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17095_high_9 (Length: 372)
Name: NF17095_high_9
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17095_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 6753038 - 6752691
Alignment:
| Q |
17 |
cacaatcctcatagcctaggttacaccagaaatttttaactctagcaaactgacagtgcgtctccataagaacaacaagtaaaggtttatatcttttaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753038 |
cacaatcctcatagcctaggttacaccagaaatttttaactctagaaaactgacagtgcgtctccataagaacaacaagtaaaggtttatatcttttaat |
6752939 |
T |
|
| Q |
117 |
aaggactcgggtttgtctcttaccctccttattaacggcaccccttataattccaactaagaatagataaatcattaaaactagtcataagtaccttagg |
216 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6752938 |
aaggactcgggttcgtctcttaccctccttattaacggcaccccttata-ttccaactaagaatagataaatcattaaaactagtcataagtaccttagt |
6752840 |
T |
|
| Q |
217 |
gaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttaacatttgcactagccttggaaccatcattatttatgtggacacc |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6752839 |
gaaataaaggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttgacatttgcactagccttggaaccatccttatttatgtggacacc |
6752740 |
T |
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| Q |
317 |
acttgtattattaatttcatgcttattacacatgttggatcctttgctt |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6752739 |
acttgtattattaatttcatgcttattacacatgttggatcctttgctt |
6752691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 1811496 - 1811761
Alignment:
| Q |
17 |
cacaatcctcatagcctaggttacaccagaaatttttaactctagcaaactgacagtgcgtctccataagaacaacaagtaaaggtttatatcttttaat |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811496 |
cacaattctcatagcctaggttacaccagaaatttttaactctagaaaactgagagtgcgtctccataagaacaacaagtaaaggtttatatcttttaat |
1811595 |
T |
|
| Q |
117 |
aaggactcgggtttgtctcttaccctccttattaacggcaccccttataattccaactaagaatagataaatcattaaaactagtcataagtaccttagg |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811596 |
aaggactcgggtttgtctcttaccctccttattaacggcaccccttat-attccaactaagaatagataaatcattaaaactagtcataagtaccttagt |
1811694 |
T |
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| Q |
217 |
gaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttaacatttgcact |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1811695 |
gaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggaattaacatttgcact |
1811761 |
T |
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