View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17095_low_1 (Length: 603)
Name: NF17095_low_1
Description: NF17095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17095_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 210 - 593
Target Start/End: Complemental strand, 26418674 - 26418297
Alignment:
| Q |
210 |
aactttgtagtgcttgctcacactttttgattgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaattatt |
309 |
Q |
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| T |
26418674 |
aactttgtagtgcttgctcacactttttgattgaaggtgtgtctagtgtttaacaagtgtcaatgtctgagaccaacacgtgtgattgcattcaattatc |
26418575 |
T |
|
| Q |
310 |
ccatttcttaaaataaattattatcagtgtcgatatgtcagtgttgtgtctgtgt-agtgtttcataggttttatatggttagtggaatttgtaatgcgt |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||| | |
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| T |
26418574 |
ccatttcttaaaataaattattatcagtgtcga-------gtgttgtgtctgtgtcagtgtttcattggtttgatatggttactggaatttgtaatgcat |
26418482 |
T |
|
| Q |
409 |
gctaaagggtcagtagcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaggttaggtaccagtggttgtttggtt |
508 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26418481 |
gctaaagggtcagtggcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaagttaggtaccagtggttgtttggtt |
26418382 |
T |
|
| Q |
509 |
tgtcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggttgatgatgt |
593 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26418381 |
tgtcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggtttatgatgt |
26418297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 26420999 - 26420795
Alignment:
| Q |
17 |
atcaacttgctatctaggttcatgcttcatgtaaacattgattttagttgctttgcattttagtgtaaattttaatctgttttggttatagacgagttat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26420999 |
atcaacttgctatctaggttcatgcttcatgtaaacattgattttagttgctttgcattttagtgtaaattttaatatgttttggttatagacgagttat |
26420900 |
T |
|
| Q |
117 |
aaattgatgtgtagaatgtacatttaattaacaaaatggatttgagcttataatagcatatagtataatttatgggttagtcaatgtgttcataactttg |
216 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26420899 |
aaattgatgtgtcgaatgtacatttaattaacaaaatggatttgagcttataatagcatatagtataatttatgggttagtcaatgtgttcataactttg |
26420800 |
T |
|
| Q |
217 |
tagtg |
221 |
Q |
| |
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||||| |
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| T |
26420799 |
tagtg |
26420795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 143 - 585
Target Start/End: Original strand, 27981460 - 27981926
Alignment:
| Q |
143 |
attaacaaaatggatttgagcttataatagcat--------atagtataatttatgggttagtcaatgtgttcataa---ctttgtagtgcttgctcaca |
231 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| || ||||| ||| | ||| |
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| T |
27981460 |
attaacaaaatggacttgagcttataatagtatcctatactatagtataatttatgggttagtcaacgtgttcataataactctgtagggct--cacact |
27981557 |
T |
|
| Q |
232 |
ctttttgattgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaattattccatttcttaaaataaattatt |
331 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||| |
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| T |
27981558 |
ttttttgatctaaggtgtgtctggtgtctaacacgtgtttgtgtctgagaccgacacatgtgattgcattcaactatcccatttcttcaaataaattatt |
27981657 |
T |
|
| Q |
332 |
atcagtgt-------cgatatgtcagtgttgtgtctg-tgt-agtgt------ttcata---ggttttatatggttagtggaatttgtaatgcgtgctaa |
413 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||||| |||||| ||||| |||||||||||||| ||| ||||| ||||||| |
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| T |
27981658 |
atcagtgttgagtatcgatatgtcagtgttgtgtctggtgtcagtgtcataggttcataataggtttgatatggttagtggagtttctaatgtgtgctaa |
27981757 |
T |
|
| Q |
414 |
agggtcagtagcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaggttaggtac---cagtggttgtttggtttg |
510 |
Q |
| |
|
||||| |||| |||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
27981758 |
agggttagtatcctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaagaggatgggtacaagttaggtactggtggtggttgttttgtttg |
27981857 |
T |
|
| Q |
511 |
tcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggtt |
585 |
Q |
| |
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|||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||| |
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| T |
27981858 |
tcagtgaaggatgatggaggtg------gtgactgtgaaggtctaaggaggtttggttggtctcctgtggtggtt |
27981926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 143 - 585
Target Start/End: Original strand, 28067990 - 28068456
Alignment:
| Q |
143 |
attaacaaaatggatttgagcttataatagcat--------atagtataatttatgggttagtcaatgtgttcataa---ctttgtagtgcttgctcaca |
231 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| || ||||| ||| | ||| |
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|
| T |
28067990 |
attaacaaaatggacttgagcttataatagtatcctatactatagtataatttatgggttagtcaacgtgttcataataactctgtagggct--cacact |
28068087 |
T |
|
| Q |
232 |
ctttttgattgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaattattccatttcttaaaataaattatt |
331 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||| |
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| T |
28068088 |
ttttttgatctaaggtgtgtctggtgtctaacacgtgtttgtgtctgagaccgacacatgtgattgcattcaactatcccatttcttcaaataaattatt |
28068187 |
T |
|
| Q |
332 |
atcagtgt-------cgatatgtcagtgttgtgtctg-tgt-agtgt------ttcata---ggttttatatggttagtggaatttgtaatgcgtgctaa |
413 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||||| |||||| ||||| |||||||||||||| ||| ||||| ||||||| |
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| T |
28068188 |
atcagtgttgagtatcgatatgtcagtgttgtgtctggtgtcagtgtcataggttcataataggtttgatatggttagtggagtttctaatgtgtgctaa |
28068287 |
T |
|
| Q |
414 |
agggtcagtagcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaggttaggtac---cagtggttgtttggtttg |
510 |
Q |
| |
|
||||| |||| |||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| |
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|
| T |
28068288 |
agggttagtatcctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaagaggatgggtacaagttaggtactggtggtggttgttttgtttg |
28068387 |
T |
|
| Q |
511 |
tcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggtt |
585 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
28068388 |
tcagtgaaggatgatggaggtg------gtgactgtgaaggtctaaggaggtttggttggtctcctgtggtggtt |
28068456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 27991873 - 27991919
Alignment:
| Q |
42 |
ttcatgtaaacattgattttagttgctttgcattttagtgtaaattt |
88 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
27991873 |
ttcatgtaaacattgattttatttgctttgcatcttagtgtaaattt |
27991919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 28078406 - 28078452
Alignment:
| Q |
42 |
ttcatgtaaacattgattttagttgctttgcattttagtgtaaattt |
88 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
28078406 |
ttcatgtaaacattgattttatttgctttgcatcttagtgtaaattt |
28078452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 27981397 - 27981440
Alignment:
| Q |
17 |
atcaacttgctatctaggttcatgcttcatgtaaacattgattt |
60 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||| |
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|
| T |
27981397 |
atcaacttactttctaggttcatgcttcatgtaaacattcattt |
27981440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 28067927 - 28067970
Alignment:
| Q |
17 |
atcaacttgctatctaggttcatgcttcatgtaaacattgattt |
60 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
28067927 |
atcaacttactttctaggttcatgcttcatgtaaacattcattt |
28067970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 1745228 - 1745186
Alignment:
| Q |
273 |
tgtctgagaccaacacatgtgattgcattcaattattccattt |
315 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
1745228 |
tgtctgacaccaacacatgtgattccattcaattatgccattt |
1745186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 27931831 - 27931891
Alignment:
| Q |
246 |
gtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaatt |
306 |
Q |
| |
|
||||||||| ||| ||||| ||||| ||||| || |||| ||||||||||| ||||||||| |
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|
| T |
27931831 |
gtgtgtctgatgtctaacacgtgtctatgtccgaaaccagcacatgtgattacattcaatt |
27931891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 19161069 - 19161121
Alignment:
| Q |
240 |
ttgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgt |
292 |
Q |
| |
|
|||||||||||||||||||||| || |||||| | || || |||||||||||| |
|
|
| T |
19161069 |
ttgaaggtgtgtctggtgtttagcatgtgtcagtatcggacaccaacacatgt |
19161121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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